Summary
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The Rfam group coordinates the annotation of Rfam families in Wikipedia. This family is described by a Wikipedia entry CyVA-1 RNA motif. More...
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Sequences
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Table view (230 sequence regions)
Original order | Download FASTA | Accession | Bit score | Type | Start | End | Description | Species | View context |
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0 | URS0000D6A925_12908 | N/A | seed | 1 | 83 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
1 | URS0000D671C8_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
2 | URS0000D6CB2D_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
3 | URS0000D6858E_12908 | N/A | seed | 1 | 77 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
4 | URS0000D69E94_373994 | N/A | seed | 1 | 79 | Rivularia sp. PCC 7116 CyVA-1 RNA | Rivularia sp. PCC 7116 | ||
5 | URS0000D67C7D_234267 | N/A | seed | 1 | 81 | Candidatus Solibacter usitatus Ellin6076 CyVA-1 RNA | Candidatus Solibacter usitatus Ellin6076 | ||
6 | URS0000D66CC2_12908 | N/A | seed | 1 | 80 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
7 | URS0000D66562_320771 | N/A | seed | 1 | 76 | Pedosphaera parvula Ellin514 CyVA-1 RNA | Pedosphaera parvula Ellin514 | ||
8 | URS0000D6977E_12908 | N/A | seed | 1 | 77 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
9 | URS0000D6777D_102232 | N/A | seed | 1 | 76 | Gloeocapsa sp. PCC 73106 CyVA-1 RNA | Gloeocapsa sp. PCC 73106 | ||
10 | URS0000D65C8D_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
11 | URS0000D6A1CE_128403 | N/A | seed | 1 | 77 | Scytonema hofmanni PCC 7110 CyVA-1 RNA | Scytonema hofmanni PCC 7110 | ||
12 | URS0000D6680C_1173026 | N/A | seed | 1 | 77 | Gloeocapsa sp. PCC 7428 CyVA-1 RNA | Gloeocapsa sp. PCC 7428 | ||
13 | URS0000D67EFB_251229 | N/A | seed | 1 | 77 | Chroococcidiopsis thermalis PCC 7203 CyVA-1 RNA | Chroococcidiopsis thermalis PCC 7203 | ||
14 | URS0000D6699F_65393 | N/A | seed | 1 | 77 | Cyanothece sp. PCC 7424 CyVA-1 RNA | Cyanothece sp. PCC 7424 | ||
15 | URS0000D69452_497965 | N/A | seed | 1 | 77 | Cyanothece sp. PCC 7822 CyVA-1 RNA | Cyanothece sp. PCC 7822 | ||
16 | URS0000D6C9A0_313612 | N/A | seed | 1 | 79 | Lyngbya sp. PCC 8106 CyVA-1 RNA | Lyngbya sp. PCC 8106 | ||
17 | URS0000D68258_12908 | N/A | seed | 1 | 79 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
18 | URS0000D68258_1348334 | N/A | seed | 1 | 79 | Lyngbya aestuarii BL J CyVA-1 RNA | Lyngbya aestuarii BL J | ||
19 | URS0000D6CFE5_1348334 | N/A | seed | 1 | 79 | Lyngbya aestuarii BL J CyVA-1 RNA | Lyngbya aestuarii BL J | ||
20 | URS0000D6CFE5_12908 | N/A | seed | 1 | 79 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
21 | URS0000D68A22_28072 | N/A | seed | 1 | 77 | Nostoc sp. PCC 7524 CyVA-1 RNA | Nostoc sp. PCC 7524 | ||
22 | URS0000D69B88_251229 | N/A | seed | 1 | 77 | Chroococcidiopsis thermalis PCC 7203 CyVA-1 RNA | Chroococcidiopsis thermalis PCC 7203 | ||
23 | URS0000D6745E_927677 | N/A | seed | 1 | 77 | Synechocystis sp. PCC 7509 CyVA-1 RNA | Synechocystis sp. PCC 7509 | ||
24 | URS0000D6B93E_1183438 | N/A | seed | 1 | 77 | Gloeobacter kilaueensis JS1 CyVA-1 RNA | Gloeobacter kilaueensis JS1 | ||
25 | URS0000D66170_1173021 | N/A | seed | 1 | 77 | cyanobacterium PCC 7702 CyVA-1 RNA | cyanobacterium PCC 7702 | ||
26 | URS0000D674DD_184925 | N/A | seed | 1 | 77 | Chlorogloeopsis sp. PCC 9212 CyVA-1 RNA | Chlorogloeopsis sp. PCC 9212 | ||
27 | URS0000D6856F_12908 | N/A | seed | 1 | 77 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
28 | URS0000D6856F_372787 | N/A | seed | 1 | 77 | Fischerella thermalis CyVA-1 RNA | Fischerella thermalis | ||
29 | URS0000D6856F_98439 | N/A | seed | 1 | 77 | Fischerella thermalis PCC 7521 CyVA-1 RNA | Fischerella thermalis PCC 7521 | ||
30 | URS0000D69F43_306281 | N/A | seed | 1 | 77 | Fischerella muscicola PCC 7414 CyVA-1 RNA | Fischerella muscicola PCC 7414 | ||
31 | URS0000D67B72_1174528 | N/A | seed | 1 | 77 | Fischerella sp. PCC 9339 CyVA-1 RNA | Fischerella sp. PCC 9339 | ||
32 | URS0000D68A05_372781 | N/A | seed | 1 | 77 | Fischerella muscicola SAG 1427-1 CyVA-1 RNA | Fischerella muscicola SAG 1427-1 | ||
33 | URS0000D6B6B2_1173020 | N/A | seed | 1 | 77 | Chamaesiphon minutus PCC 6605 CyVA-1 RNA | Chamaesiphon minutus PCC 6605 | ||
34 | URS0000D69284_1170562 | N/A | seed | 1 | 77 | Calothrix sp. PCC 6303 CyVA-1 RNA | Calothrix sp. PCC 6303 | ||
35 | URS0000D6D3BF_1170562 | N/A | seed | 1 | 77 | Calothrix sp. PCC 6303 CyVA-1 RNA | Calothrix sp. PCC 6303 | ||
36 | URS0000D66FDB_1173020 | N/A | seed | 1 | 77 | Chamaesiphon minutus PCC 6605 CyVA-1 RNA | Chamaesiphon minutus PCC 6605 | ||
37 | URS0000D69FC2_1385935 | N/A | seed | 1 | 77 | Leptolyngbya sp. Heron Island J CyVA-1 RNA | Leptolyngbya sp. Heron Island J | ||
38 | URS0000D65894_111780 | N/A | seed | 1 | 77 | Stanieria cyanosphaera PCC 7437 CyVA-1 RNA | Stanieria cyanosphaera PCC 7437 | ||
39 | URS0000D6B0C1_118163 | N/A | seed | 1 | 77 | Pleurocapsa sp. PCC 7327 CyVA-1 RNA | Pleurocapsa sp. PCC 7327 | ||
40 | URS0000D6C2FD_102125 | N/A | seed | 1 | 78 | Xenococcus sp. PCC 7305 CyVA-1 RNA | Xenococcus sp. PCC 7305 | ||
41 | URS0000D6C7B0_43989 | N/A | seed | 1 | 77 | Cyanothece sp. ATCC 51142 CyVA-1 RNA | Cyanothece sp. ATCC 51142 | ||
42 | URS0000D669C4_391612 | N/A | seed | 1 | 77 | Cyanothece sp. CCY0110 CyVA-1 RNA | Cyanothece sp. CCY0110 | ||
43 | URS0000D6BB2C_118161 | N/A | seed | 1 | 78 | Pleurocapsa sp. PCC 7319 CyVA-1 RNA | Pleurocapsa sp. PCC 7319 | ||
44 | URS0000D697E9_373994 | N/A | seed | 1 | 79 | Rivularia sp. PCC 7116 CyVA-1 RNA | Rivularia sp. PCC 7116 | ||
45 | URS0000D665CA_373994 | N/A | seed | 1 | 79 | Rivularia sp. PCC 7116 CyVA-1 RNA | Rivularia sp. PCC 7116 | ||
46 | URS0000D68D78_12908 | N/A | seed | 1 | 77 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
47 | URS0000D66407_1173027 | N/A | seed | 1 | 77 | Microcoleus sp. PCC 7113 CyVA-1 RNA | Microcoleus sp. PCC 7113 | ||
48 | URS0000D6C4E4_111780 | N/A | seed | 1 | 78 | Stanieria cyanosphaera PCC 7437 CyVA-1 RNA | Stanieria cyanosphaera PCC 7437 | ||
49 | URS0000D69E90_12908 | N/A | seed | 1 | 79 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
50 | URS0000D66B9E_118168 | N/A | seed | 1 | 79 | Microcoleus chthonoplastes PCC 7420 CyVA-1 RNA | Microcoleus chthonoplastes PCC 7420 | ||
51 | URS0000D66635_12908 | N/A | seed | 1 | 79 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
52 | URS0000D6A309_12908 | N/A | seed | 1 | 79 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
53 | URS0000D68885_12908 | N/A | seed | 1 | 79 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
54 | URS0000D69E02_12908 | N/A | seed | 1 | 79 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
55 | URS0000D6B000_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
56 | URS0000D69C09_12908 | N/A | seed | 1 | 81 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
57 | URS0000D6BABE_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
58 | URS0000D6BA6F_12908 | N/A | seed | 1 | 75 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
59 | URS0000D68098_1173027 | N/A | seed | 1 | 77 | Microcoleus sp. PCC 7113 CyVA-1 RNA | Microcoleus sp. PCC 7113 | ||
60 | URS0000D69FEC_12908 | N/A | seed | 1 | 77 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
61 | URS0000D6B218_12908 | N/A | seed | 1 | 77 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
62 | URS0000D66DDD_12908 | N/A | seed | 1 | 77 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
63 | URS0000D6B4F0_12908 | N/A | seed | 1 | 77 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
64 | URS0000D661BB_12908 | N/A | seed | 1 | 77 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
65 | URS0000D6A4F8_12908 | N/A | seed | 1 | 76 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
66 | URS0000D69529_12908 | N/A | seed | 1 | 77 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
67 | URS0000D6D165_1173020 | N/A | seed | 1 | 77 | Chamaesiphon minutus PCC 6605 CyVA-1 RNA | Chamaesiphon minutus PCC 6605 | ||
68 | URS0000D6C6E7_12908 | N/A | seed | 1 | 77 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
69 | URS0000D661C8_1385935 | N/A | seed | 1 | 77 | Leptolyngbya sp. Heron Island J CyVA-1 RNA | Leptolyngbya sp. Heron Island J | ||
70 | URS0000D67C9C_102129 | N/A | seed | 1 | 77 | Leptolyngbya sp. PCC 7375 CyVA-1 RNA | Leptolyngbya sp. PCC 7375 | ||
71 | URS0000D6850F_184925 | N/A | seed | 1 | 78 | Chlorogloeopsis sp. PCC 9212 CyVA-1 RNA | Chlorogloeopsis sp. PCC 9212 | ||
72 | URS0000D6D38A_1174528 | N/A | seed | 1 | 79 | Fischerella sp. PCC 9339 CyVA-1 RNA | Fischerella sp. PCC 9339 | ||
73 | URS0000D67C7B_372781 | N/A | seed | 1 | 78 | Fischerella muscicola SAG 1427-1 CyVA-1 RNA | Fischerella muscicola SAG 1427-1 | ||
74 | URS0000D6782B_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
75 | URS0000D65ACF_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
76 | URS0000D666B9_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
77 | URS0000D66A9B_12908 | N/A | seed | 1 | 76 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
78 | URS0000D6CD45_12908 | N/A | seed | 1 | 76 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
79 | URS0000D6C8B0_12908 | N/A | seed | 1 | 77 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
80 | URS0000D6B251_12908 | N/A | seed | 1 | 79 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
81 | URS0000D69516_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
82 | URS0000D6751F_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
83 | URS0000D6B3A3_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
84 | URS0000D6B563_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
85 | URS0000D69F8F_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
86 | URS0000D6A152_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
87 | URS0000D6862C_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
88 | URS0000D69D25_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
89 | URS0000D6810B_12908 | N/A | seed | 1 | 77 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
90 | URS0000D6A8E1_12908 | N/A | seed | 1 | 77 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
91 | URS0000D6698E_12908 | N/A | seed | 1 | 76 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
92 | URS0000D662D7_12908 | N/A | seed | 1 | 77 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
93 | URS0000D6998E_12908 | N/A | seed | 1 | 77 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
94 | URS0000D6B216_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
95 | URS0000D67EDE_12908 | N/A | seed | 1 | 77 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
96 | URS0000D6C2C9_12908 | N/A | seed | 1 | 81 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
97 | URS0000D676FD_195250 | N/A | seed | 1 | 78 | Synechococcus sp. PCC 7336 CyVA-1 RNA | Synechococcus sp. PCC 7336 | ||
98 | URS0000D668D3_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
99 | URS0000D684EF_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
100 | URS0000D68574_1183438 | N/A | seed | 1 | 78 | Gloeobacter kilaueensis JS1 CyVA-1 RNA | Gloeobacter kilaueensis JS1 | ||
101 | URS0000D69CC6_582515 | N/A | seed | 1 | 75 | Rubidibacter lacunae KORDI 51-2 CyVA-1 RNA | Rubidibacter lacunae KORDI 51-2 | ||
102 | URS0000D69007_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
103 | URS0000D6D127_12908 | N/A | seed | 1 | 79 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
104 | URS0000D6AB27_98439 | N/A | seed | 1 | 78 | Fischerella thermalis PCC 7521 CyVA-1 RNA | Fischerella thermalis PCC 7521 | ||
105 | URS0000D6AB27_372787 | N/A | seed | 1 | 78 | Fischerella thermalis CyVA-1 RNA | Fischerella thermalis | ||
106 | URS0000D6AB27_306281 | N/A | seed | 1 | 78 | Fischerella muscicola PCC 7414 CyVA-1 RNA | Fischerella muscicola PCC 7414 | ||
107 | URS0000D6C993_372781 | N/A | seed | 1 | 78 | Fischerella muscicola SAG 1427-1 CyVA-1 RNA | Fischerella muscicola SAG 1427-1 | ||
108 | URS0000D6A74F_1174528 | N/A | seed | 1 | 78 | Fischerella sp. PCC 9339 CyVA-1 RNA | Fischerella sp. PCC 9339 | ||
109 | URS0000D68314_927677 | N/A | seed | 1 | 78 | Synechocystis sp. PCC 7509 CyVA-1 RNA | Synechocystis sp. PCC 7509 | ||
110 | URS0000D68BA2_1173025 | N/A | seed | 1 | 79 | Geitlerinema sp. PCC 7407 CyVA-1 RNA | Geitlerinema sp. PCC 7407 | ||
111 | URS0000D6837D_179408 | N/A | seed | 1 | 78 | Oscillatoria sp. PCC 7112 CyVA-1 RNA | Oscillatoria sp. PCC 7112 | ||
112 | URS0000D6872D_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
113 | URS0000D6911E_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
114 | URS0000D66D24_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
115 | URS0000D6D237_12908 | N/A | seed | 1 | 80 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
116 | URS0000D679D0_251229 | N/A | seed | 1 | 78 | Chroococcidiopsis thermalis PCC 7203 CyVA-1 RNA | Chroococcidiopsis thermalis PCC 7203 | ||
117 | URS0000D68C56_102232 | N/A | seed | 1 | 77 | Gloeocapsa sp. PCC 73106 CyVA-1 RNA | Gloeocapsa sp. PCC 73106 | ||
118 | URS0000D6B806_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
119 | URS0000D6B806_1348334 | N/A | seed | 1 | 78 | Lyngbya aestuarii BL J CyVA-1 RNA | Lyngbya aestuarii BL J | ||
120 | URS0000D6759D_313612 | N/A | seed | 1 | 78 | Lyngbya sp. PCC 8106 CyVA-1 RNA | Lyngbya sp. PCC 8106 | ||
121 | URS0000D6B2A0_12908 | N/A | seed | 1 | 78 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
122 | URS0000D665B5_12908 | N/A | seed | 1 | 76 | unclassified sequences CyVA-1 RNA | unclassified sequences | ||
0 | CP000806.1 | 86.00 | full | 1,819,079 | 1,819,155 | Cyanothece sp. ATCC 51142 circular chromosome, complete sequence. | Cyanothece sp. ATCC 51142 |
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1 | RSCJ01000004.1 | 85.20 | full | 248,543 | 248,619 | RSCJ01000004.1 Chlorogloeopsis fritschii PCC 6912 sequence04, whole genome shotgun sequence | Chlorogloeopsis fritschii PCC 6912 |
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2 | CP003610.1 | 84.70 | full | 404,500 | 404,424 | Calothrix sp. PCC 6303, complete genome. | Calothrix sp. PCC 6303 |
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3 | JACXAE010000126.1 | 84.10 | full | 90,174 | 90,250 | JACXAE010000126.1 Iningainema tapete BLCC-T55 NODE_8_length_281259_cov_25.474348, whole genome shotgun sequence | Iningainema tapete BLCC-T55 |
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4 | JADEWY010000004.1 | 83.70 | full | 10,524 | 10,448 | JADEWY010000004.1 Coleofasciculus sp. LEGE 07092 NODE_26_length_88103_cov_12.6592, whole genome shotgun sequence | Coleofasciculus sp. LEGE 07092 |
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5 | JACYLO010000094.1 | 83.50 | full | 148,508 | 148,584 | JACYLO010000094.1 MAG: Elainella sp. C42_A2020_010 NODE_161_length_255197_cov_185.022870, whole genome shotgun sequence | Elainella sp. C42_A2020_010 |
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6 | LATL02000227.1 | 83.40 | full | 2,861 | 2,783 | Limnoraphis robusta CS-951 contig227, whole genome shotgun sequence. | Limnoraphis robusta CS-951 |
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7 | CP019636.1 | 83.20 | full | 695,595 | 695,519 | CP019636.1 Nostocales cyanobacterium HT-58-2 chromosome, complete sequence | Nostocales cyanobacterium HT-58-2 |
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8 | JAECZC010000007.1 | 82.60 | full | 233,569 | 233,493 | JAECZC010000007.1 Amazonocrinis nigriterrae CENA67 scaffold7, whole genome shotgun sequence | Amazonocrinis nigriterrae CENA67 |
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9 | JAHHIF010000003.1 | 81.90 | full | 13,831 | 13,755 | JAHHIF010000003.1 MAG: Symplocastrum torsivum CPER-KK1 scaffold_47_c1, whole genome shotgun sequence | Phormidiaceae cyanobacterium CPER-KK1 |
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10 | CP003630.1 | 81.80 | full | 1,764,911 | 1,764,835 | Microcoleus sp. PCC 7113, complete genome. | Microcoleus sp. PCC 7113 |
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11 | AWNH01000017.1 | 81.50 | full | 27,053 | 27,129 | Leptolyngbya sp. Heron Island J, whole genome shotgun sequence. | Leptolyngbya sp. Heron Island J |
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12 | JADEWO010000025.1 | 81.30 | full | 15,947 | 15,871 | JADEWO010000025.1 Oculatella sp. LEGE 06141 NODE_25_length_91807_cov_10.7806, whole genome shotgun sequence | Oculatella sp. LEGE 06141 |
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13 | JAECZC010000002.1 | 80.60 | full | 161,102 | 161,178 | JAECZC010000002.1 Amazonocrinis nigriterrae CENA67 scaffold2, whole genome shotgun sequence | Amazonocrinis nigriterrae CENA67 |
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14 | CP003600.1 | 80.50 | full | 2,328,698 | 2,328,622 | Chamaesiphon minutus PCC 6605, complete genome. | Chamaesiphon minutus PCC 6605 |
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15 | AP018254.1 | 80.40 | full | 5,762,371 | 5,762,447 | AP018254.1 Calothrix sp. NIES-3974 DNA, complete genome | Calothrix sp. NIES-3974 |
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16 | JADEXP010000144.1 | 80.40 | full | 8,417 | 8,341 | JADEXP010000144.1 Leptolyngbya cf. ectocarpi LEGE 11479 NODE_268_length_14903_cov_4.01123_(reversed), whole genome shotgun sequence | Leptolyngbya cf. ectocarpi LEGE 11479 |
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17 | JAHHIF010000021.1 | 80.30 | full | 23,344 | 23,420 | JAHHIF010000021.1 MAG: Symplocastrum torsivum CPER-KK1 scaffold_124_c1, whole genome shotgun sequence | Phormidiaceae cyanobacterium CPER-KK1 |
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18 | CP003597.1 | 80.20 | full | 2,404,501 | 2,404,425 | Chroococcidiopsis thermalis PCC 7203, complete genome. | Chroococcidiopsis thermalis PCC 7203 |
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19 | CP003610.1 | 80.10 | full | 405,226 | 405,150 | Calothrix sp. PCC 6303, complete genome. | Calothrix sp. PCC 6303 |
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20 | JADEXR010000126.1 | 80.10 | full | 11,989 | 11,913 | JADEXR010000126.1 Aff. Roholtiella sp. LEGE 12411 NODE_174_length_17278_cov_28.109148, whole genome shotgun sequence | aff. Roholtiella sp. LEGE 12411 |
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21 | CP001291.1 | 80.00 | full | 4,406,315 | 4,406,239 | Cyanothece sp. PCC 7424, complete genome. | Cyanothece sp. PCC 7424 |
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22 | JADEWQ010000018.1 | 80.00 | full | 64,816 | 64,892 | JADEWQ010000018.1 Pleurocapsales cyanobacterium LEGE 06147 NODE_75_length_6, whole genome shotgun sequence | Pleurocapsales cyanobacterium LEGE 06147 |
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23 | CP003552.1 | 79.60 | full | 4,519,213 | 4,519,289 | Nostoc sp. PCC 7524, complete genome. | Nostoc sp. PCC 7524 |
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24 | CP003653.1 | 79.50 | full | 4,738,064 | 4,737,988 | Stanieria cyanosphaera PCC 7437, complete genome. | Stanieria cyanosphaera PCC 7437 |
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25 | KQ976354.1 | 79.50 | full | 3,600,383 | 3,600,307 | Scytonema hofmannii PCC 7110 genomic scaffold Scaffold1, whole genome shotgun sequence. | Scytonema hofmanni PCC 7110 |
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26 | MJGC01000066.1 | 79.50 | full | 1,281 | 1,205 | Desertifilum sp. IPPAS B-1220 NODE_3_length_228677_cov_34.2432, whole genome shotgun sequence. | Desertifilum sp. IPPAS B-1220 |
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27 | CP002198.1 | 79.40 | full | 3,351,812 | 3,351,736 | Cyanothece sp. PCC 7822, complete genome. | Cyanothece sp. PCC 7822 |
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28 | CP003587.1 | 79.30 | full | 789,282 | 789,358 | Gloeobacter kilaueensis JS1, complete genome. | Gloeobacter kilaueensis JS1 |
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29 | PXOH01000029.1 | 79.00 | full | 27,177 | 27,253 | PXOH01000029.1 Aphanothece hegewaldii CCALA 016 NODE_98_length_54879_cov_70.4276_ID_75079, whole genome shotgun sequence | Aphanothece hegewaldii CCALA 016 |
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30 | JAHHGZ010000012.1 | 78.90 | full | 128,295 | 128,371 | JAHHGZ010000012.1 MAG: Cyanomargarita calcarea GSE-NOS-MK-12-04C scaffold_30_c1, whole genome shotgun sequence | Cyanomargarita calcarea GSE-NOS-MK-12-04C |
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31 | AWNH01000030.1 | 78.90 | full | 9,912 | 9,988 | Leptolyngbya sp. Heron Island J, whole genome shotgun sequence. | Leptolyngbya sp. Heron Island J |
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32 | JAHHHV010000067.1 | 78.80 | full | 112,385 | 112,308 | JAHHHV010000067.1 MAG: Pegethrix bostrychoides GSE-TBD4-15B scaffold_54_c1, whole genome shotgun sequence | Pegethrix bostrychoides GSE-TBD4-15B |
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33 | DS989855.1 | 78.60 | full | 118,157 | 118,079 | Microcoleus chthonoplastes PCC 7420 scf_1103659003821 genomic scaffold, whole genome shotgun sequence. | Microcoleus chthonoplastes PCC 7420 |
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34 | CP003590.1 | 78.50 | full | 4,373,225 | 4,373,149 | Pleurocapsa sp. PCC 7327, complete genome. | Pleurocapsa sp. PCC 7327 |
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35 | LXQD01000303.1 | 78.40 | full | 42,123 | 42,200 | LXQD01000303.1 Nostoc minutum NIES-26 scaffold47.1, whole genome shotgun sequence | Nostoc minutum NIES-26 |
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36 | MRCE01000041.1 | 78.40 | full | 11,474 | 11,550 | Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_41, whole genome shotgun sequence. | Phormidium ambiguum IAM M-71 |
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37 | JACYLO010000033.1 | 78.30 | full | 10,431 | 10,507 | JACYLO010000033.1 MAG: Elainella sp. C42_A2020_010 NODE_3058_length_25705_cov_183.445029, whole genome shotgun sequence | Elainella sp. C42_A2020_010 |
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38 | CP003597.1 | 78.20 | full | 104,057 | 104,133 | Chroococcidiopsis thermalis PCC 7203, complete genome. | Chroococcidiopsis thermalis PCC 7203 |
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39 | AP018281.1 | 76.40 | full | 350,747 | 350,824 | AP018281.1 Chondrocystis sp. NIES-4102 DNA, complete genome | Chondrocystis sp. NIES-4102 |
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40 | MTAV01000098.1 | 76.30 | full | 5,895 | 5,819 | MTAV01000098.1 Nostoc sp. T09 NODE_151_length_31729_cov_113.404366, whole genome shotgun sequence | Nostoc sp. T09 |
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41 | JACYLU010000038.1 | 75.80 | full | 250,939 | 251,015 | JACYLU010000038.1 MAG: Synechococcales cyanobacterium C42_A2020_086 NODE_148_length_274475_cov_83.231568, whole genome shotgun sequence | Synechococcales cyanobacterium C42_A2020_086 |
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42 | JADEXK010000036.1 | 75.60 | full | 14,625 | 14,549 | JADEXK010000036.1 Nostocales cyanobacterium LEGE 11386 NODE_65_length_60521_cov_13.0031, whole genome shotgun sequence | Nostocales cyanobacterium LEGE 11386 |
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43 | CP003597.1 | 75.30 | full | 68,365 | 68,442 | Chroococcidiopsis thermalis PCC 7203, complete genome. | Chroococcidiopsis thermalis PCC 7203 |
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44 | JADEWL010000166.1 | 75.30 | full | 4,025 | 4,103 | JADEWL010000166.1 Plectonema cf. radiosum LEGE 06105 NODE_473_length_13455_cov_13.9799, whole genome shotgun sequence | Plectonema cf. radiosum LEGE 06105 |
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45 | JADEWY010000183.1 | 75.30 | full | 2,024 | 1,948 | JADEWY010000183.1 Coleofasciculus sp. LEGE 07092 NODE_383_length_10454_cov_9.70882, whole genome shotgun sequence | Coleofasciculus sp. LEGE 07092 |
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46 | JADEWX010000124.1 | 75.30 | full | 5,832 | 5,908 | JADEWX010000124.1 Nodosilinea sp. LEGE 07088 NODE_222_length_19193_cov_42.9095, whole genome shotgun sequence | Nodosilinea sp. LEGE 07088 |
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47 | AAVU01000013.1 | 75.10 | full | 3,261 | 3,339 | Lyngbya sp. PCC 8106 1099428180538, whole genome shotgun sequence. | Lyngbya sp. PCC 8106 |
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48 | JACYLU010000002.1 | 74.90 | full | 19,350 | 19,427 | JACYLU010000002.1 MAG: Synechococcales cyanobacterium C42_A2020_086 NODE_48_length_472145_cov_82.580372, whole genome shotgun sequence | Synechococcales cyanobacterium C42_A2020_086 |
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49 | LN889813.1 | 74.90 | full | 503,243 | 503,321 | Planktothrix tepida PCC 9214 isolate BBR_PRJEB10993 genome assembly, scaffold: BBR_B_PL9214_scaffold57 | Planktothrix sp. PCC 9214 |
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50 | CP003600.1 | 74.80 | full | 2,521,015 | 2,521,091 | Chamaesiphon minutus PCC 6605, complete genome. | Chamaesiphon minutus PCC 6605 |
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51 | JACJSL010000118.1 | 74.80 | full | 10,057 | 10,133 | JACJSL010000118.1 Coleofasciculus sp. FACHB-SPT36 contig118, whole genome shotgun sequence | Coleofasciculus sp. FACHB-SPT36 |
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52 | AGIZ01000002.1 | 74.50 | full | 169,416 | 169,492 | Fischerella sp. JSC-11 ctg116, whole genome shotgun sequence. | Fischerella sp. JSC-11 |
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53 | JADEWQ010000116.1 | 74.50 | full | 16,750 | 16,674 | JADEWQ010000116.1 Pleurocapsales cyanobacterium LEGE 06147 NODE_295_length_, whole genome shotgun sequence | Pleurocapsales cyanobacterium LEGE 06147 |
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54 | CP003630.1 | 74.00 | full | 1,949,242 | 1,949,318 | Microcoleus sp. PCC 7113, complete genome. | Microcoleus sp. PCC 7113 |
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55 | CP003600.1 | 73.80 | full | 5,942,125 | 5,942,201 | Chamaesiphon minutus PCC 6605, complete genome. | Chamaesiphon minutus PCC 6605 |
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56 | JAECZB010000113.1 | 73.60 | full | 96,826 | 96,902 | JAECZB010000113.1 Atlanticothrix silvestris CENA357 scaffold167, whole genome shotgun sequence | Atlanticothrix silvestris CENA357 |
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57 | CP024785.1 | 73.60 | full | 1,523,137 | 1,523,061 | CP024785.1 Nostoc flagelliforme CCNUN1 chromosome, complete genome | Nostoc flagelliforme CCNUN1 |
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58 | ALVZ01000226.1 | 72.00 | full | 31,340 | 31,263 | Xenococcus sp. PCC 7305 scaffold_00226, whole genome shotgun sequence. | Xenococcus sp. PCC 7305 |
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59 | CP003549.1 | 72.00 | full | 6,731,648 | 6,731,570 | Rivularia sp. PCC 7116, complete genome. | Rivularia sp. PCC 7116 |
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60 | ALVY01000216.1 | 71.50 | full | 47,777 | 47,702 | Gloeocapsa sp. PCC 73106 scaffold_00216, whole genome shotgun sequence. | Gloeocapsa sp. PCC 73106 |
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61 | CP003549.1 | 71.50 | full | 6,731,953 | 6,731,875 | Rivularia sp. PCC 7116, complete genome. | Rivularia sp. PCC 7116 |
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62 | AGIZ01000010.1 | 71.00 | full | 69,679 | 69,756 | Fischerella sp. JSC-11 ctg109, whole genome shotgun sequence. | Fischerella sp. JSC-11 |
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63 | NSHF01000024.1 | 70.90 | full | 15,845 | 15,769 | NSHF01000024.1 Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 scaffold24, whole genome shotgun sequence | Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 |
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64 | PVWK01000055.1 | 70.60 | full | 5,412 | 5,336 | PVWK01000055.1 Stenomitos frigidus ULC18 145, whole genome shotgun sequence | Stenomitos frigidus ULC18 |
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65 | CP003653.1 | 69.90 | full | 218,597 | 218,520 | Stanieria cyanosphaera PCC 7437, complete genome. | Stanieria cyanosphaera PCC 7437 |
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66 | JACJOM010000126.1 | 69.80 | full | 172,235 | 172,312 | JACJOM010000126.1 Trichocoleus sp. FACHB-832 contig126, whole genome shotgun sequence | Trichocoleus sp. FACHB-832 |
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67 | LMTZ01000013.1 | 69.60 | full | 152,177 | 152,254 | Mastigocoleus testarum BC008 Contig-11, whole genome shotgun sequence. | Mastigocoleus testarum BC008 |
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68 | LMTZ01000086.1 | 69.60 | full | 7,954 | 7,877 | Mastigocoleus testarum BC008 Contig-20, whole genome shotgun sequence. | Mastigocoleus testarum BC008 |
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69 | JYON01000035.1 | 68.60 | full | 50,685 | 50,608 | Chroococcales cyanobacterium CENA595 contig_301, whole genome shotgun sequence. | Aliterella atlantica CENA595 |
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70 | AAVU01000001.1 | 68.00 | full | 253,864 | 253,787 | Lyngbya sp. PCC 8106 1099428180515, whole genome shotgun sequence. | Lyngbya sp. PCC 8106 |
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71 | JADEXJ010000014.1 | 67.50 | full | 129 | 51 | JADEXJ010000014.1 Pleurocapsales cyanobacterium LEGE 10410 NODE_14_length_63438_cov_3.64145, whole genome shotgun sequence | Pleurocapsales cyanobacterium LEGE 10410 |
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72 | CP003549.1 | 67.50 | full | 8,174,924 | 8,174,846 | Rivularia sp. PCC 7116, complete genome. | Rivularia sp. PCC 7116 |
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73 | JADEXJ010000014.1 | 67.40 | full | 340 | 262 | JADEXJ010000014.1 Pleurocapsales cyanobacterium LEGE 10410 NODE_14_length_63438_cov_3.64145, whole genome shotgun sequence | Pleurocapsales cyanobacterium LEGE 10410 |
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74 | PVWF01000007.1 | 67.40 | full | 146 | 224 | PVWF01000007.1 Pleurocapsa sp. CCALA 161 NODE_9_length_85339_cov_10.449_ID_68675, whole genome shotgun sequence | Pleurocapsa sp. CCALA 161 |
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75 | CP003591.1 | 67.20 | full | 3,318,171 | 3,318,093 | Geitlerinema sp. PCC 7407, complete genome. | Geitlerinema sp. PCC 7407 |
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76 | LR214134.1 | 66.20 | full | 2,545 | 2,621 | LR214134.1 Hyella patelloides LEGE 07179 genome assembly, scaffold: H1P_scaffold369, whole genome shotgun sequence | Hyella sp. LEGE 07179 |
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77 | CP003646.1 | 65.30 | full | 1,711,326 | 1,711,402 | Gloeocapsa sp. PCC 7428, complete genome. | Gloeocapsa sp. PCC 7428 |
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78 | PYEQ01000248.1 | 65.20 | full | 1,529 | 1,452 | PYEQ01000248.1 Filamentous cyanobacterium CCP5 NODE_818_length_6830_cov_3.17222_ID_102735, whole genome shotgun sequence | filamentous cyanobacterium CCP5 |
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79 | CP003587.1 | 64.60 | full | 2,693,489 | 2,693,412 | Gloeobacter kilaueensis JS1, complete genome. | Gloeobacter kilaueensis JS1 |
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80 | PVWJ01000068.1 | 61.20 | full | 3,024 | 3,100 | PVWJ01000068.1 Merismopedia glauca CCAP 1448/3 NODE_201_length_28646_cov_6.71165_ID_39038, whole genome shotgun sequence | Merismopedia glauca CCAP 1448/3 |
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81 | CP021983.2 | 60.90 | full | 1,028,454 | 1,028,377 | CP021983.2 Halomicronema hongdechloris C2206 genome | Halomicronema hongdechloris C2206 |
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82 | CP003614.1 | 59.40 | full | 944,657 | 944,734 | Oscillatoria nigro-viridis PCC 7112, complete genome. | Oscillatoria sp. PCC 7112 |
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83 | ABOX02000003.1 | 59.10 | full | 49,499 | 49,574 | Pedosphaera parvula Ellin514 ctg197, whole genome shotgun sequence. | Pedosphaera parvula Ellin514 |
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84 | ALVY01000071.1 | 58.80 | full | 313 | 389 | Gloeocapsa sp. PCC 73106 scaffold_00071, whole genome shotgun sequence. | Gloeocapsa sp. PCC 73106 |
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85 | JACMKO010000471.1 | 58.30 | full | 2,420 | 2,496 | JACMKO010000471.1 MAG: Leptolyngbya sp. ES-bin-22 ES-bin-22-contig-k141_11116854, whole genome shotgun sequence | Leptolyngbya sp. ES-bin-22 |
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86 | JACJPL010000020.1 | 57.40 | full | 56,029 | 56,105 | JACJPL010000020.1 Leptolyngbya sp. FACHB-261 contig20, whole genome shotgun sequence | Leptolyngbya sp. FACHB-261 |
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87 | LATL02000342.1 | 57.40 | full | 13,186 | 13,262 | Limnoraphis robusta CS-951 contig342, whole genome shotgun sequence. | Limnoraphis robusta CS-951 |
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88 | CP051167.1 | 55.90 | full | 3,482,557 | 3,482,475 | CP051167.1 Oxynema aestuarii AP17 chromosome, complete genome | Oxynema aestuarii AP17 |
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89 | PVWN01000009.1 | 54.90 | full | 117,630 | 117,553 | PVWN01000009.1 Chlorogloea sp. CCALA 695 NODE_10_length_132334_cov_8.97988_ID_63280, whole genome shotgun sequence | Chlorogloea sp. CCALA 695 |
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90 | RSCJ01000016.1 | 53.60 | full | 106,307 | 106,384 | RSCJ01000016.1 Chlorogloeopsis fritschii PCC 6912 sequence16, whole genome shotgun sequence | Chlorogloeopsis fritschii PCC 6912 |
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91 | PVWK01000098.1 | 53.20 | full | 93,062 | 92,986 | PVWK01000098.1 Stenomitos frigidus ULC18 62, whole genome shotgun sequence | Stenomitos frigidus ULC18 |
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92 | CP042326.1 | 52.80 | full | 1,387,769 | 1,387,847 | CP042326.1 Euhalothece natronophila Z-M001 chromosome, complete genome | Euhalothece natronophila Z-M001 |
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93 | PVWI01000046.1 | 52.50 | full | 5,949 | 6,026 | PVWI01000046.1 Filamentous cyanobacterium Phorm 6 NODE_50_length_29121_cov_5.83491_ID_62762, whole genome shotgun sequence | filamentous cyanobacterium Phorm 6 |
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94 | JACJPW010000020.1 | 52.50 | full | 67,786 | 67,709 | JACJPW010000020.1 Aerosakkonema funiforme FACHB-1375 contig20, whole genome shotgun sequence | Aerosakkonema funiforme FACHB-1375 |
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95 | ASSJ01000055.1 | 52.20 | full | 28,947 | 29,021 | Rubidibacter lacunae KORDI 51-2 KR51_contig00085, whole genome shotgun sequence. | Rubidibacter lacunae KORDI 51-2 |
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96 | JACMKL010000132.1 | 51.80 | full | 4,366 | 4,443 | JACMKL010000132.1 MAG: Candidatus Melainabacteria bacterium isolate ES-bin-223 ES-bin-223-contig-k141_1889988, whole genome shotgun sequence | Candidatus Melainabacteria bacterium |
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97 | JACJPL010000026.1 | 51.70 | full | 532,984 | 533,060 | JACJPL010000026.1 Leptolyngbya sp. FACHB-261 contig26, whole genome shotgun sequence | Leptolyngbya sp. FACHB-261 |
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98 | WVIC01000034.1 | 51.60 | full | 10,581 | 10,504 | WVIC01000034.1 Petrachloros mirabilis ULC683 NODE_438_length_46136_cov_122.125171, whole genome shotgun sequence | Petrachloros mirabilis ULC683 |
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99 | CP030840.1 | 49.20 | full | 6,385,646 | 6,385,720 | CP030840.1 Acidisarcina polymorpha strain SBC82 chromosome, complete genome | Acidisarcina polymorpha |
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100 | CP000360.1 | 48.00 | full | 3,248,850 | 3,248,928 | Candidatus Koribacter versatilis Ellin345, complete genome. | Candidatus Koribacter versatilis Ellin345 |
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101 | JACJSL010000003.1 | 46.80 | full | 38,914 | 38,837 | JACJSL010000003.1 Coleofasciculus sp. FACHB-SPT36 contig3, whole genome shotgun sequence | Coleofasciculus sp. FACHB-SPT36 |
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102 | CP011382.1 | 44.60 | full | 4,505,975 | 4,505,875 | Calothrix sp. 336/3, complete genome. | Calothrix sp. 336/3 |
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103 | CP003587.1 | 44.50 | full | 2,695,982 | 2,695,902 | Gloeobacter kilaueensis JS1, complete genome. | Gloeobacter kilaueensis JS1 |
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104 | BMES01000001.1 | 44.40 | full | 9,787 | 9,708 | BMES01000001.1 Alsobacter metallidurans CGMCC 1.12214 DNA, sequence1, whole genome shotgun sequence | alpha proteobacterium SK200a-9 |
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105 | PVZS01000011.1 | 44.20 | full | 119,633 | 119,712 | PVZS01000011.1 Alsobacter soli strain SH9 scaffold11, whole genome shotgun sequence | Alsobacter soli |
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106 | FOZL01000002.1 | 41.90 | full | 675,140 | 675,062 | FOZL01000002.1 Granulicella pectinivorans strain DSM 21001 genome assembly, contig: Ga0111653_12, whole genome shotgun sequence | Granulicella pectinivorans |
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Alignment
There are various ways to view or download the seed alignments that we store. You can use a sequence viewer to look at them, or you can look at a plain text version of the sequence in a variety of different formats. More...
View options
You can view Rfam seed alignments in your browser in various ways. Choose the viewer that you want to use and click the "View" button to show the alignment in a pop-up window.
Formatting options
You can view or download Rfam seed alignments in several formats. Check either the "download" button, to save the formatted alignment, or "view", to see it in your browser window, and click "Generate".
Download
Download a gzip-compressed, Stockholm-format file containing the seed alignment for this family. You may find RALEE useful when viewing sequence alignments.
Submit a new alignment
We're happy receive updated seed alignments for new or existing families. Submit your new alignment and we'll take a look.
Secondary structure
This section shows a variety of different secondary structure representations for this family. More...
You can view the secondary structure of the family using the VARNA applet. You can see more information about VARNA iself here.
Current Rfam structure
18 out of 18 basepairs are significant at E-value=0.05
R-scape optimised structure
18 out of 24 basepairs are significant at E-value=0.05
- Colours
- Statistically significant basepair with covariation
- 97% conserved nucleotide
- 90% conserved nucleotide
- 75% conserved nucleotide
- 50% conserved nucleotide
- Nucleotides
- R: A or G
- Y: C or U
Tip: The diagrams are interactive:
you can pan and zoom to see more details
or hover over nucleotides and basepairs.
R-scape is a method for testing whether covariation analysis supports the presence of a conserved RNA secondary structure. This page shows R-scape analysis of the secondary structure from the Rfam seed alignment and a new structure with covariation support that is compatible with the same alignment.
To find out more about the method, see the R-scape paper by Rivas et al., 2016. The structures are visualised using R2R.
Species distribution
Sunburst controls
HideLineage
Move your mouse over the main tree to show the lineage of a particular node.
You can move this pane by dragging it.
Weight segments by...
Change the size of the sunburst
Colour assignments
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Selections
Click on a node to select that node and its sub-tree.
Clear selection
This visualisation provides a simple graphical representation of the distribution of this family across species. You can find the original interactive tree in the adjacent tab. More...
Tree controls
HideThe tree shows the occurrence of this RNA across different species. More...
Loading...
Please note: for large trees this can take some time. While the tree is loading, you can safely switch away from this tab but if you browse away from the family page entirely, the tree will not be loaded.
Trees
This page displays the predicted phylogenetic tree for the alignment. More...
Note: You can also download the data file for the seed tree.
Motif matches
There are 1 motifs which match this family.
This section shows the Rfam motifs that match sequences within the seed alignment of this family. Users should be aware that the motifs are structural constructs and do not necessarily conform to taxonomic boundaries in the way that Rfam families do. More...
Original order | Motif Accession | Motif Description | Number of Hits | Fraction of Hits | Sum of Bits | Image |
---|---|---|---|---|---|---|
7 | RM00008 | GNRA tetraloop | 33 | 0.268 | 310.0 |
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References
This section shows the database cross-references that we have for this Rfam family.
Literature references
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Weinberg Z, Lunse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR, Sherlock ME, Breaker RR Nucleic Acids Res. 2017;45:10811-10823. Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions. PUBMED:28977401
External database links
Sequence Ontology: | SO:0000370 (small_regulatory_ncRNA); |
Curation and family details
This section shows the detailed information about the Rfam family. We're happy to receive updated or improved alignments for new or existing families. Submit your new alignment and we'll take a look.
Curation
Seed source | Weinberg Z | ||||||
Structure source | Published; PMID:28977401; | ||||||
Type | Gene; sRNA; | ||||||
Author |
Weinberg Z |
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Alignment details |
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Model information
Build commands |
cmbuild -F CM SEED
cmcalibrate --mpi CM
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Search command |
cmsearch --cpu 4 --verbose --nohmmonly -T 24.26 -Z 2958934 CM SEQDB
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Gathering cutoff | 41.4 |
Trusted cutoff | 41.9 |
Noise cutoff | 41.1 |
Covariance model | Download |