# Species tree for RF02356 # Generated from Rfam version 15.00 | +--Eukaryota (4) | | | +--Sar (1) | | | | | +--Alveolata (1) | | | | | +--Dinophyceae (1) | | | | | +--Suessiales (1) | | | | | +--Symbiodiniaceae (1) | | | | | +--Effrenium voratum (1) | | | +--Metazoa (1) | | | | | +--Chordata (1) | | | | | +--Craniata (1) | | | | | +--Vertebrata (1) | | | | | +--Euteleostomi (1) | | | | | +--Testudines (1) | | | | | +--Cryptodira (1) | | | | | +--Testudinoidea (1) | | | | | +--Chelydridae (1) | | | | | +--Platysternon megacephalum (big-headed turtle) (1) | | | +--Viridiplantae (2) | | | +--Streptophyta (2) | | | +--Embryophyta (2) | | | +--Tracheophyta (2) | | | +--Spermatophyta (2) | | | +--Magnoliophyta (2) | | | +--eudicotyledons (2) | | | +--coreeudicotyledons (2) | | | +--Caryophyllales (2) | | | +--Amaranthaceae (2) | | | +--Beta vulgaris subsp. vulgaris (2) | +--Bacteria (271) | | | +--Proteobacteria (140) | | | | | +--Alphaproteobacteria (138) | | | | | | | +--Polymorphum gilvum SL003B-26A1 (1) | | | | | | | +--Rhizobiales (122) | | | | | | | | | +--Brucellaceae (7) | | | | | | | | | | | +--Paenochrobactrum gallinarii (1) | | | | | | | | | | | +--Ochrobactrum (1) | | | | | | | | | | | | | +--Ochrobactrum intermedium 229E (1) | | | | | | | | | | | +--Brucella melitensis biovar Abortus 2308 (1) | | | | | | | | | | | +--Ochrobactrum rhizosphaerae (1) | | | | | | | | | | | +--Ochrobactrum gallinifaecis (1) | | | | | | | | | | | +--Ochrobactrum anthropi ATCC 49188 (1) | | | | | | | | | | | +--Pseudochrobactrum saccharolyticum (1) | | | | | | | | | +--Methylocystaceae (4) | | | | | | | | | | | +--Methylocystis sp. B8 (1) | | | | | | | | | | | +--Methylocystis echinoides (1) | | | | | | | | | | | +--Methylocystis parvus (1) | | | | | | | | | | | +--Methylopila sp. JZL-4 (1) | | | | | | | | | +--Phyllobacteriaceae (29) | | | | | | | | | | | +--Pseudaminobacter salicylatoxidans (1) | | | | | | | | | | | +--Hoeflea marina (1) | | | | | | | | | | | +--Mesorhizobium sp. LC103 (1) | | | | | | | | | | | +--Mesorhizobium sp. ORS3428 (1) | | | | | | | | | | | +--Phyllobacterium myrsinacearum (1) | | | | | | | | | | | +--Mesorhizobium sp. LSHC420B00 (1) | | | | | | | | | | | +--Mesorhizobium australicum (1) | | | | | | | | | | | +--Mesorhizobium albiziae (1) | | | | | | | | | | | +--Pseudaminobacter manganicus (1) | | | | | | | | | | | +--Mesorhizobium sp. Root554 (1) | | | | | | | | | | | +--Aquamicrobium lusatiense (1) | | | | | | | | | | | +--Hoeflea phototrophica DFL-43 (1) | | | | | | | | | | | +--Mesorhizobium sp. BD68 (1) | | | | | | | | | | | +--Aminobacter sp. MSH1 (1) | | | | | | | | | | | +--Phyllobacterium leguminum (1) | | | | | | | | | | | +--Mesorhizobium sp. WSM3876 (1) | | | | | | | | | | | +--Nitratireductor (1) | | | | | | | | | | | | | +--Nitratireductor indicus C115 (1) | | | | | | | | | | | +--Parvibaculum lavamentivorans DS-1 (1) | | | | | | | | | | | +--Mesorhizobium australicum WSM2073 (1) | | | | | | | | | | | +--Nitratireductor sp. Pht-3B (1) | | | | | | | | | | | +--Nitratireductor basaltis (1) | | | | | | | | | | | +--Phyllobacterium sp. YR531 (1) | | | | | | | | | | | +--Mesorhizobium sp. B7 (1) | | | | | | | | | | | +--Mesorhizobium sp. UASWS1009 (1) | | | | | | | | | | | +--Mesorhizobium sp. Root157 (1) | | | | | | | | | | | +--Paramesorhizobium deserti (1) | | | | | | | | | | | +--Mesorhizobium (1) | | | | | | | | | | | | | +--Mesorhizobium alhagi CCNWXJ12-2 (1) | | | | | | | | | | | +--Hoeflea sp. IMCC20628 (1) | | | | | | | | | | | +--Hoeflea sp. JG120-1 (1) | | | | | | | | | +--unclassifiedRhizobiales (6) | | | | | | | | | | | +--Methyloceanibacter marginalis (1) | | | | | | | | | | | +--Methylobrevis pamukkalensis (1) | | | | | | | | | | | +--Methyloligella halotolerans (1) | | | | | | | | | | | +--Methyloceanibacter methanicus (1) | | | | | | | | | | | +--Pseudorhodoplanes sinuspersici (1) | | | | | | | | | | | +--Methyloceanibacter superfactus (1) | | | | | | | | | +--Hyphomicrobiaceae (23) | | | | | | | | | | | +--Devosia sp. L15 (1) | | | | | | | | | | | +--Rhodoplanes serenus (1) | | | | | | | | | | | +--Rhodoplanes roseus (1) | | | | | | | | | | | +--Pelagibacterium halotolerans B2 (1) | | | | | | | | | | | +--Prosthecomicrobium enhydrum (1) | | | | | | | | | | | +--Devosia soli (1) | | | | | | | | | | | +--Candidatus Filomicrobium marinum (1) | | | | | | | | | | | +--Devosia geojensis (1) | | | | | | | | | | | +--Rhodoplanes elegans (1) | | | | | | | | | | | +--Pelagibacterium luteolum (1) | | | | | | | | | | | +--Devosia (1) | | | | | | | | | | | | | +--Devosia limi DSM 17137 (1) | | | | | | | | | | | +--Prosthecomicrobium hirschii (1) | | | | | | | | | | | +--Rhodoplanes sp. Z2-YC6860 (1) | | | | | | | | | | | +--Hyphomicrobium sp. NL23 (1) | | | | | | | | | | | +--Devosia sp. Root413D1 (1) | | | | | | | | | | | +--Devosia epidermidihirudinis (1) | | | | | | | | | | | +--Prosthecomicrobium litoralum (1) | | | | | | | | | | | +--Hyphomicrobium sulfonivorans (1) | | | | | | | | | | | +--Hyphomicrobium sp. MC1 (1) | | | | | | | | | | | +--Angulomicrobium tetraedale (1) | | | | | | | | | | | +--Blastochloris viridis (1) | | | | | | | | | | | +--Devosia sp. LC5 (1) | | | | | | | | | | | +--Hyphomicrobium facile (1) | | | | | | | | | +--Rhodobiaceae (3) | | | | | | | | | | | +--Rhodobium orientis (1) | | | | | | | | | | | +--Tepidicaulis marinus (1) | | | | | | | | | | | +--Tepidamorphus gemmatus (1) | | | | | | | | | +--Rhizobiaceae (1) | | | | | | | | | | | +--Kaistia (1) | | | | | | | | | | | +--Kaistia soli DSM 19436 (1) | | | | | | | | | +--Xanthobacteraceae (4) | | | | | | | | | | | +--Starkeya novella DSM 506 (1) | | | | | | | | | | | +--Labrys okinawensis (1) | | | | | | | | | | | +--Pseudolabrys sp. Root1462 (1) | | | | | | | | | | | +--Pseudolabrys taiwanensis (1) | | | | | | | | | +--Cohaesibacter gelatinilyticus (1) | | | | | | | | | +--Cohaesibacter sp. DQHS-21 (1) | | | | | | | | | +--Methylobacteriaceae (10) | | | | | | | | | | | +--Methylobacterium sp. Leaf93 (1) | | | | | | | | | | | +--Microvirga vignae (1) | | | | | | | | | | | +--Methylobacterium nodulans ORS 2060 (1) | | | | | | | | | | | +--Microvirga flocculans (1) | | | | | | | | | | | +--Methylobacterium extorquens AM1 (1) | | | | | | | | | | | +--Microvirga subterranea (1) | | | | | | | | | | | +--Microvirga sp. BSC39 (1) | | | | | | | | | | | +--Microvirga aerophila (1) | | | | | | | | | | | +--Methylobacterium rhodinum (1) | | | | | | | | | | | +--Methylobacterium sp. 23e (1) | | | | | | | | | +--Bradyrhizobiaceae (31) | | | | | | | | | | | +--Bosea sp. Root381 (1) | | | | | | | | | | | +--Afipia sp. P52-10 (1) | | | | | | | | | | | +--Afipia sp. GAS231 (1) | | | | | | | | | | | +--Bradyrhizobium sp. STM 3843 (1) | | | | | | | | | | | +--Rhodopseudomonas faecalis (1) | | | | | | | | | | | +--Bradyrhizobium sp. ORS 278 (1) | | | | | | | | | | | +--Bosea sp. Leaf344 (1) | | | | | | | | | | | +--Bosea sp. AAP35 (1) | | | | | | | | | | | +--Bosea sp. TND4EK4 (1) | | | | | | | | | | | +--Bosea sp. PAMC 26642 (1) | | | | | | | | | | | +--Bosea thiooxidans (1) | | | | | | | | | | | +--Bradyrhizobium japonicum USDA 110 (1) | | | | | | | | | | | +--Bosea sp. RAC05 (1) | | | | | | | | | | | +--Rhodopseudomonas rhenobacensis (1) | | | | | | | | | | | +--Oligotropha carboxidovorans OM5 (1) | | | | | | | | | | | +--Nitrobacter winogradskyi Nb-255 (1) | | | | | | | | | | | +--Bradyrhizobium erythrophlei (1) | | | | | | | | | | | +--Rhodopseudomonas sp. (1) | | | | | | | | | | | +--Bosea sp. Root483D1 (1) | | | | | | | | | | | +--Bosea sp. LC85 (1) | | | | | | | | | | | +--Bosea sp. LMG 26379 (1) | | | | | | | | | | | +--Bradyrhizobium sp. LMTR 3 (1) | | | | | | | | | | | +--Afipia sp. Root123D2 (1) | | | | | | | | | | | +--Bradyrhizobium sp. LTSP885 (1) | | | | | | | | | | | +--Afipia (1) | | | | | | | | | | | | | +--Afipia broomeae ATCC 49717 (1) | | | | | | | | | | | +--Rhodopseudomonas sp. R-45977 (1) | | | | | | | | | | | +--Rhodopseudomonas palustris CGA009 (1) | | | | | | | | | | | +--Bosea sp. WAO (1) | | | | | | | | | | | +--Salinarimonas sp. SL014B-41A4 (1) | | | | | | | | | | | +--Nitrobacter sp. Nb-311A (1) | | | | | | | | | | | +--Nitrobacter hamburgensis X14 (1) | | | | | | | | | +--Phyllobacteriaceae bacterium AMV1 (1) | | | | | | | | | +--Beijerinckiaceae (1) | | | | | | | | | +--Chelatococcus asaccharovorans (1) | | | | | | | +--Rhizobiales bacterium IZ6 (1) | | | | | | | +--Sneathiellales (1) | | | | | | | | | +--Sneathiellaceae (1) | | | | | | | | | +--Sneathiella sp. BFLP-8 (1) | | | | | | | +--Rhodobacterales (13) | | | | | | | +--Rhodobacteraceae bacterium CC-SBABM117 (1) | | | | | | | +--Rhodobacteraceae (12) | | | | | | | +--Nesiotobacter exalbescens (1) | | | | | | | +--Roseibium sp. TrichSKD4 (1) | | | | | | | +--Rhodovulum sp. PH10 (1) | | | | | | | +--Labrenzia sp. YC6927 (1) | | | | | | | +--Labrenzia aggregata (1) | | | | | | | +--Pseudovibrio sp. Ad2 (1) | | | | | | | +--Labrenzia alba (1) | | | | | | | +--Roseibium hamelinense (1) | | | | | | | +--Stappia indica (1) | | | | | | | +--Pannonibacter phragmitetus (1) | | | | | | | +--Stappia sp. ES.058 (1) | | | | | | | +--Stappia sp. CC-SPIO-10 (1) | | | | | +--alpha proteobacterium UBF-P1 (1) | | | | | +--alpha proteobacterium SK200a-9 (1) | | | +--bacterium YEK0313 (1) | | | +--Pseudomonadota (130) | | | +--Alphaproteobacteria (130) | | | +--Hyphomicrobiales (129) | | | | | +--Rhizobiales bacterium GAS113 (1) | | | | | +--Brucellaceae (3) | | | | | | | +--Falsochrobactrum shanghaiense (1) | | | | | | | +--Falsochrobactrum ovis (1) | | | | | | | +--Brucella/Ochrobactrumgroup (1) | | | | | | | +--Brucella endophytica (1) | | | | | +--Pleomorphomonadaceae (4) | | | | | | | +--Hartmannibacter diazotrophicus (1) | | | | | | | +--Pleomorphomonas diazotrophica (1) | | | | | | | +--Methylobrevis albus (1) | | | | | | | +--Oharaeibacter diazotrophicus (1) | | | | | +--Methylocystaceae (4) | | | | | | | +--Chenggangzhangella methanolivorans (1) | | | | | | | +--Methylopila turkensis (1) | | | | | | | +--Methylopila (1) | | | | | | | | | +--Methylopila sp. Yamaguchi (1) | | | | | | | +--Hansschlegelia quercus (1) | | | | | +--Phreatobacteraceae (2) | | | | | | | +--Phreatobacter aquaticus (1) | | | | | | | +--Phreatobacter cathodiphilus (1) | | | | | +--Boseaceae (3) | | | | | | | +--Bosea caraganae (1) | | | | | | | +--Bosea spartocytisi (1) | | | | | | | +--Bosea (1) | | | | | | | +--Bosea sp. OK403 (1) | | | | | +--Aestuariivirgaceae (1) | | | | | | | +--Aestuariivirga litoralis (1) | | | | | +--Devosiaceae (12) | | | | | | | +--Youhaiella tibetensis (1) | | | | | | | +--Devosia aurantiaca (1) | | | | | | | +--Pelagibacterium lentulum (1) | | | | | | | +--Devosia oryzisoli (1) | | | | | | | +--Devosia pacifica (1) | | | | | | | +--Pelagibacterium lacus (1) | | | | | | | +--Devosia equisanguinis (1) | | | | | | | +--Devosia (4) | | | | | | | | | +--Devosia sp. MC521 (1) | | | | | | | | | +--Devosia sp. I507 (1) | | | | | | | | | +--Devosia sp. A8/3-2 (1) | | | | | | | | | +--Devosia sp. Root685 (1) | | | | | | | +--Arsenicitalea aurantiaca (1) | | | | | +--Phyllobacteriaceae (32) | | | | | | | +--Hoeflea prorocentri (1) | | | | | | | +--Mesorhizobium microcysteis (1) | | | | | | | +--Mesorhizobium zhangyense (1) | | | | | | | +--Phyllobacterium (1) | | | | | | | | | +--Phyllobacterium sp. YR620 (1) | | | | | | | +--Phyllobacterium endophyticum (1) | | | | | | | +--Mesorhizobium waimense (1) | | | | | | | +--Nitratireductor aestuarii (1) | | | | | | | +--Oricola cellulosilytica (1) | | | | | | | +--Nitratireductor mangrovi (1) | | | | | | | +--Tianweitania populi (1) | | | | | | | +--Chelativorans petroleitrophicus (1) | | | | | | | +--Mesorhizobium wenxiniae (1) | | | | | | | +--Nitratireductor (1) | | | | | | | | | +--Nitratireductor sp. StC3 (1) | | | | | | | +--Mesorhizobium ephedrae (1) | | | | | | | +--Mesorhizobium denitrificans (1) | | | | | | | +--Phyllobacterium zundukense (1) | | | | | | | +--Zhengella mangrovi (1) | | | | | | | +--Tianweitania sediminis (1) | | | | | | | +--Mesorhizobium (6) | | | | | | | | | +--Mesorhizobium sp. 8 (1) | | | | | | | | | +--Mesorhizobium sp. J18 (1) | | | | | | | | | +--Mesorhizobium sp. NBSH29 (1) | | | | | | | | | +--Mesorhizobium sp. YM1C-6-2 (1) | | | | | | | | | +--Mesorhizobium sp. Root172 (1) | | | | | | | | | +--Mesorhizobium sp. L-8-10 (1) | | | | | | | +--Pseudaminobacter arsenicus (1) | | | | | | | +--Oryzicola mucosus (1) | | | | | | | +--Aquamicrobium (1) | | | | | | | | | +--Aquamicrobium aerolatum DSM 21857 (1) | | | | | | | +--Mesorhizobium soli (1) | | | | | | | +--Pseudohoeflea suaedae (1) | | | | | | | +--Pseudaminobacter soli (1) | | | | | | | +--Aminobacter (1) | | | | | | | | | +--Aminobacter sp. J15 (1) | | | | | | | +--Mesorhizobium sanjuanii (1) | | | | | +--Alsobacteraceae (1) | | | | | | | +--Alsobacter soli (1) | | | | | +--Nitrobacteraceae (8) | | | | | | | +--Tardiphaga (2) | | | | | | | | | +--Tardiphaga sp. (1) | | | | | | | | | +--Tardiphaga sp. vice352 (1) | | | | | | | +--Variibacter gotjawalensis (1) | | | | | | | +--Bradyrhizobiaceae bacterium (1) | | | | | | | +--Candidatus Afipia apatlaquensis (1) | | | | | | | +--Bradyrhizobium ivorense (1) | | | | | | | +--Bradyrhizobium sediminis (1) | | | | | | | +--Bradyrhizobium (1) | | | | | | | +--Bradyrhizobium sp. Leo170 (1) | | | | | +--Rhodobiaceae (1) | | | | | | | +--Rhodobiaceae bacterium (1) | | | | | +--Rhizobiaceae (2) | | | | | | | +--Rhizobium/Agrobacteriumgroup (1) | | | | | | | | | +--Pararhizobium mangrovi (1) | | | | | | | +--Georhizobium profundi (1) | | | | | +--Propylenellaceae (1) | | | | | | | +--Propylenella binzhouense (1) | | | | | +--Blastochloridaceae (1) | | | | | | | +--Blastochloris tepida (1) | | | | | +--Breoghaniaceae (1) | | | | | | | +--Breoghania (1) | | | | | | | +--Breoghania sp. L-A4 (1) | | | | | +--Lichenibacteriaceae (1) | | | | | | | +--Lichenibacterium minor (1) | | | | | +--Afifellaceae (1) | | | | | | | +--Afifella (1) | | | | | | | +--Afifella marina DSM 2698 (1) | | | | | +--Stappiaceae (9) | | | | | | | +--Roseibium limicola (1) | | | | | | | +--Stappia sediminis (1) | | | | | | | +--Stappia albiluteola (1) | | | | | | | +--Roseibium (1) | | | | | | | | | +--Roseibium sp. RKSG952 (1) | | | | | | | +--Roseibium aquae (1) | | | | | | | +--Labrenzia (2) | | | | | | | | | +--Labrenzia sp. THAF82 (1) | | | | | | | | | +--Labrenzia sp. 011 (1) | | | | | | | +--Roseibium alexandrii (1) | | | | | | | +--Pannonibacter (1) | | | | | | | +--Pannonibacter sp. XCT-53 (1) | | | | | +--Hyphomicrobialesincertaesedis (1) | | | | | | | +--Nordella (1) | | | | | | | +--Nordella sp. HKS 07 (1) | | | | | +--Aurantimonadaceae (3) | | | | | | | +--Aurantimonas aggregata (1) | | | | | | | +--Aureimonas glaciei (1) | | | | | | | +--Fulvimarina endophytica (1) | | | | | +--Parvibaculaceae (2) | | | | | | | +--Kaustia mangrovi (1) | | | | | | | +--Parvibaculum sedimenti (1) | | | | | +--Hyphomicrobiaceae (6) | | | | | | | +--Hyphomicrobium album (1) | | | | | | | +--Methyloligella (1) | | | | | | | | | +--Methyloligella sp. GL2 (1) | | | | | | | +--Methyloceanibacter (1) | | | | | | | | | +--Methyloceanibacter sp. (1) | | | | | | | +--Methyloceanibacter stevinii (1) | | | | | | | +--Rhodoplanes (1) | | | | | | | | | +--Rhodoplanes sp. (1) | | | | | | | +--Limoniibacter endophyticus (1) | | | | | +--Xanthobacteraceae (5) | | | | | | | +--Starkeya nomas (1) | | | | | | | +--Ancylobacter pratisalsi (1) | | | | | | | +--Ancylobacter (1) | | | | | | | | | +--Ancylobacter sp. TS-1 (1) | | | | | | | +--Starkeya (1) | | | | | | | | | +--Starkeya sp. ORNL1 (1) | | | | | | | +--Ancylobacter defluvii (1) | | | | | +--Cohaesibacteraceae (3) | | | | | | | +--Cohaesibacter celericrescens (1) | | | | | | | +--Cohaesibacter (2) | | | | | | | +--Cohaesibacter sp. ES.047 (1) | | | | | | | +--Cohaesibacter sp. CAU 1516 (1) | | | | | +--Rhizobiales bacterium PAR1 (1) | | | | | +--Salinarimonadaceae (1) | | | | | | | +--Salinarimonas soli (1) | | | | | +--Methylobacteriaceae (15) | | | | | | | +--Methylobacterium oryzihabitans (1) | | | | | | | +--Enterovirga rhinocerotis (1) | | | | | | | +--Enterovirga (1) | | | | | | | | | +--Enterovirga sp. DB1703 (1) | | | | | | | +--Microvirga (1) | | | | | | | | | +--Microvirga sp. VF16 (1) | | | | | | | +--Methylobacterium durans (1) | | | | | | | +--Methylobacterium radiodurans (1) | | | | | | | +--Microvirga thermotolerans (1) | | | | | | | +--Microvirga mediterraneensis (1) | | | | | | | +--Methylobacterium symbioticum (1) | | | | | | | +--Microvirga brassicacearum (1) | | | | | | | +--Methylobacterium planeticum (1) | | | | | | | +--Methylobacterium terrae (1) | | | | | | | +--Methylobacterium haplocladii (1) | | | | | | | +--Microvirga tunisiensis (1) | | | | | | | +--Microvirga alba (1) | | | | | +--Chelatococcaceae (2) | | | | | | | +--Chelatococcus reniformis (1) | | | | | | | +--Chelatococcus composti (1) | | | | | +--Beijerinckiaceae (2) | | | | | +--Beijerinckia (1) | | | | | | | +--Beijerinckia sp. 28-YEA-48 (1) | | | | | +--Rhodoblastus (1) | | | | | +--Rhodoblastus sp. (1) | | | +--Rhodobacterales (1) | | | +--Rhodobacterales bacterium (1) | +--metsulfuron-methyl degrading bacterium S113 (1)