# Species tree for RF00435 # Generated from Rfam version 15.00 | +--Eukaryota (4) | | | +--Metazoa (3) | | | | | +--Chordata (2) | | | | | | | +--Craniata (2) | | | | | | | +--Vertebrata (2) | | | | | | | +--Euteleostomi (1) | | | | | | | | | +--Testudines (1) | | | | | | | | | +--Cryptodira (1) | | | | | | | | | +--Testudinoidea (1) | | | | | | | | | +--Chelydridae (1) | | | | | | | | | +--Platysternon megacephalum (big-headed turtle) (1) | | | | | | | +--Chondrichthyes (1) | | | | | | | +--Elasmobranchii (1) | | | | | | | +--Galeomorphii (1) | | | | | | | +--Galeoidea (1) | | | | | | | +--Orectolobiformes (1) | | | | | | | +--Hemiscylliidae (1) | | | | | | | +--Chiloscyllium punctatum (brownbanded bambooshark) (1) | | | | | +--Arthropoda (1) | | | | | +--Hexapoda (1) | | | | | +--Insecta (1) | | | | | +--Pterygota (1) | | | | | +--Neoptera (1) | | | | | +--Endopterygota (1) | | | | | +--Diptera (1) | | | | | +--Brachycera (1) | | | | | +--Muscomorpha (1) | | | | | +--Ephydroidea (1) | | | | | +--Drosophilidae (1) | | | | | +--Drosophila (1) | | | | | +--Drosophila kikkawai (1) | | | +--Viridiplantae (1) | | | +--Streptophyta (1) | | | +--Streptophytina (1) | | | +--Embryophyta (1) | | | +--Marchantiophyta (1) | | | +--Marchantiopsida (1) | | | +--Marchantiidae (1) | | | +--Marchantiales (1) | | | +--Marchantiaceae (1) | | | +--Marchantia (1) | | | +--Marchantia polymorpha subsp. ruderalis (1) | +--Bacteria (381) | +--Proteobacteria (193) | | | +--Alphaproteobacteria (191) | | | | | +--Rhizobiales (113) | | | | | | | +--Brucellaceae (2) | | | | | | | | | +--Ochrobactrum (1) | | | | | | | | | | | +--Ochrobactrum intermedium 229E (1) | | | | | | | | | +--Ochrobactrum anthropi ATCC 49188 (1) | | | | | | | +--Methylocystaceae (3) | | | | | | | | | +--Hansschlegelia plantiphila (1) | | | | | | | | | +--Methylocystis echinoides (2) | | | | | | | +--Aurantimonadaceae (2) | | | | | | | | | +--Aurantimonas altamirensis (1) | | | | | | | | | +--Aurantimonas sp. USBA 369 (1) | | | | | | | +--Phyllobacteriaceae (11) | | | | | | | | | +--Nitratireductor (1) | | | | | | | | | | | +--Nitratireductor indicus C115 (1) | | | | | | | | | +--Mesorhizobium australicum WSM2073 (2) | | | | | | | | | +--Mesorhizobium sp. LSHC420B00 (1) | | | | | | | | | +--Mesorhizobium sp. UASWS1009 (2) | | | | | | | | | +--Mesorhizobium albiziae (1) | | | | | | | | | +--Pseudaminobacter manganicus (1) | | | | | | | | | +--Mesorhizobium sp. Root157 (1) | | | | | | | | | +--Aquamicrobium lusatiense (1) | | | | | | | | | +--Mesorhizobium sp. WSM3876 (1) | | | | | | | +--Hyphomicrobiaceae (6) | | | | | | | | | +--Rhodoplanes serenus (1) | | | | | | | | | +--Prosthecomicrobium pneumaticum (1) | | | | | | | | | +--Rhodoplanes sp. Z2-YC6860 (3) | | | | | | | | | +--Devosia sp. Root413D1 (1) | | | | | | | +--Rhizobiaceae (35) | | | | | | | | | +--Rhizobium/Agrobacteriumgroup (24) | | | | | | | | | | | +--Rhizobium alkalisoli (3) | | | | | | | | | | | +--Rhizobium sp. Root482 (1) | | | | | | | | | | | +--Rhizobium cellulosilyticum (2) | | | | | | | | | | | +--Rhizobium phaseoli (1) | | | | | | | | | | | +--Rhizobium tibeticum (3) | | | | | | | | | | | +--Rhizobium sp. Root149 (1) | | | | | | | | | | | +--Rhizobium sp. NT-26 (1) | | | | | | | | | | | +--Rhizobium (2) | | | | | | | | | | | | | +--Rhizobiumgallicum (2) | | | | | | | | | | | | | +--Rhizobium gallicum bv. gallicum R602 (2) | | | | | | | | | | | +--Rhizobium giardinii (1) | | | | | | | | | | | +--Pararhizobium polonicum (1) | | | | | | | | | | | +--Rhizobium daejeonense (1) | | | | | | | | | | | +--Rhizobium sp. CCBAU 85046 (2) | | | | | | | | | | | +--Agrobacterium tumefaciens str. C58 (2) | | | | | | | | | | | +--Rhizobium etli CFN 42 (2) | | | | | | | | | | | +--Rhizobium sp. LC145 (1) | | | | | | | | | +--Sinorhizobium/Ensifergroup (11) | | | | | | | | | +--Sinorhizobium terangae (4) | | | | | | | | | +--Sinorhizobium saheli (1) | | | | | | | | | +--Sinorhizobium meliloti 1021 (1) | | | | | | | | | +--Ensifer sp. YIC4027 (1) | | | | | | | | | +--Sinorhizobium fredii NGR234 (4) | | | | | | | +--Xanthobacteraceae (4) | | | | | | | | | +--Xanthobacter autotrophicus Py2 (1) | | | | | | | | | +--Labrys okinawensis (2) | | | | | | | | | +--Pseudolabrys taiwanensis (1) | | | | | | | +--Methylobacteriaceae (21) | | | | | | | | | +--Methylobacterium sp. Leaf104 (2) | | | | | | | | | +--Microvirga aerilata (2) | | | | | | | | | +--Microvirga vignae (1) | | | | | | | | | +--Methylobacterium nodulans ORS 2060 (2) | | | | | | | | | +--Microvirga flocculans (3) | | | | | | | | | +--Methylobacterium extorquens AM1 (1) | | | | | | | | | +--Microvirga subterranea (1) | | | | | | | | | +--Microvirga sp. BSC39 (2) | | | | | | | | | +--Methylobacterium sp. Leaf99 (1) | | | | | | | | | +--Microvirga guangxiensis (1) | | | | | | | | | +--Microvirga aerophila (3) | | | | | | | | | +--Methylobacterium sp. 23e (2) | | | | | | | +--Bradyrhizobiaceae (29) | | | | | | | +--Bosea sp. Root381 (1) | | | | | | | +--Bradyrhizobium sp. STM 3843 (1) | | | | | | | +--Bradyrhizobium sp. ORS 278 (1) | | | | | | | +--Bradyrhizobium japonicum USDA 110 (5) | | | | | | | +--Bosea thiooxidans (1) | | | | | | | +--Nitrobacter winogradskyi Nb-255 (4) | | | | | | | +--Bradyrhizobium erythrophlei (1) | | | | | | | +--Oligotropha carboxidovorans OM5 (1) | | | | | | | +--Bosea sp. Root483D1 (1) | | | | | | | +--Afipia (3) | | | | | | | | | +--Afipia broomeae ATCC 49717 (3) | | | | | | | +--Bradyrhizobium sp. LMTR 3 (3) | | | | | | | +--Afipia sp. Root123D2 (1) | | | | | | | +--Bosea sp. LC85 (1) | | | | | | | +--Rhodopseudomonas sp. R-45977 (1) | | | | | | | +--Nitrobacter sp. Nb-311A (2) | | | | | | | +--Nitrobacter hamburgensis X14 (2) | | | | | +--Rhodospirillales (10) | | | | | | | +--Acetobacteraceae (8) | | | | | | | | | +--Ameyamaea chiangmaiensis (1) | | | | | | | | | +--Gluconobacter oxydans 621H (1) | | | | | | | | | +--Gluconacetobacter saccharivorans (1) | | | | | | | | | +--Acetobacteraceae bacterium AT-5844 (1) | | | | | | | | | +--Acidomonas (1) | | | | | | | | | | | +--Acidomonas methanolica NBRC 104435 (1) | | | | | | | | | +--Acetobacter senegalensis (1) | | | | | | | | | +--Gluconacetobacter diazotrophicus PAl 5 (1) | | | | | | | | | +--Belnapia sp. CPCC 100156 (1) | | | | | | | +--Rhodospirillaceae (2) | | | | | | | +--Magnetospirillum marisnigri (1) | | | | | | | +--Azospirillum amazonense Y2 (1) | | | | | +--Caulobacterales (1) | | | | | | | +--Caulobacteraceae (1) | | | | | | | +--Phenylobacterium zucineum HLK1 (1) | | | | | +--Sphingomonadales (52) | | | | | | | +--Erythrobacteraceae (11) | | | | | | | | | +--Erythrobacter sp. UST081027-248 (1) | | | | | | | | | +--Erythrobacter longus (1) | | | | | | | | | +--Altererythrobacter sp. Root672 (2) | | | | | | | | | +--Altererythrobacter xiamenensis (1) | | | | | | | | | +--Croceicoccus naphthovorans (1) | | | | | | | | | +--Altererythrobacter atlanticus (3) | | | | | | | | | +--Erythrobacter gaetbuli (1) | | | | | | | | | +--Erythrobacter litoralis HTCC2594 (1) | | | | | | | +--Sphingomonadaceae (41) | | | | | | | +--Sphingomonas sp. JJ-A5 (3) | | | | | | | +--Novosphingobium sp. LL02 (1) | | | | | | | +--Sphingomonas taxi (1) | | | | | | | +--Sphingobium amiense (1) | | | | | | | +--Novosphingobium sp. ST904 (1) | | | | | | | +--Sphingosinicella sp. JLT832 (1) | | | | | | | +--Sphingobium sp. 469 (1) | | | | | | | +--Sphingobium sp. LL03 (1) | | | | | | | +--Sphingomonas sp. Root710 (1) | | | | | | | +--Novosphingobium sp. PP1Y (1) | | | | | | | +--Sphingobium cloacae (5) | | | | | | | +--Sphingomonas sp. ERB1-3 (1) | | | | | | | +--Sphingomonas (5) | | | | | | | | | +--Sphingomonas sanxanigenens DSM 19645 = NX02 (5) | | | | | | | +--Sphingomonas koreensis (4) | | | | | | | +--Sphingobium sp. EP60837 (3) | | | | | | | +--Sphingomonas sp. Root720 (1) | | | | | | | +--Sphingomonas sp. SRS2 (1) | | | | | | | +--Sphingomonas sp. Dd16 (1) | | | | | | | +--Sphingobium sp. TKS (3) | | | | | | | +--Novosphingobium pentaromativorans US6-1 (1) | | | | | | | +--Sphingobium baderi (2) | | | | | | | +--Sphingopyxis sp. 113P3 (1) | | | | | | | +--Sphingobium sp. SYK-6 (1) | | | | | +--Rhodobacterales (15) | | | | | +--Rhodobacteraceae bacterium CC-SBABM117 (1) | | | | | +--Rhodobacteraceae (14) | | | | | +--Roseovarius halotolerans (1) | | | | | +--Paracoccus yeei (2) | | | | | +--Donghicola xiamenensis (1) | | | | | +--Rubellimicrobium roseum (1) | | | | | +--Citreicella sp. CK-I3-6 (1) | | | | | +--Paracoccus denitrificans PD1222 (1) | | | | | +--Roseovarius pacificus (1) | | | | | +--Rubellimicrobium sp. MSL 20 (1) | | | | | +--Paracoccus seriniphilus (1) | | | | | +--Pelagibaca abyssi (1) | | | | | +--Thiobacimonas profunda (1) | | | | | +--Celeribacter indicus (1) | | | | | +--Paracoccus sp. J56 (1) | | | +--Gammaproteobacteria (2) | | | +--Xanthomonadales (1) | | | | | +--Xanthomonadaceae (1) | | | | | +--Dokdonella fugitiva (1) | | | +--Pseudomonadales (1) | | | +--Moraxellaceae (1) | | | +--Enhydrobacter aerosaccus (1) | +--Spirochaetota (1) | | | +--Spirochaetia (1) | | | +--Spirochaetia bacterium (1) | +--bacterium YEK0313 (1) | +--Pseudomonadota (186) | +--Alphaproteobacteria (184) | | | +--Hyphomicrobiales (112) | | | | | +--Propylenellaceae (1) | | | | | | | +--Propylenella binzhouense (1) | | | | | +--Rhizobiales bacterium GAS113 (1) | | | | | +--Brucellaceae (1) | | | | | | | +--Falsochrobactrum shanghaiense (1) | | | | | +--Hyphomicrobialesincertaesedis (3) | | | | | | | +--Nordella (3) | | | | | | | +--Nordella sp. HKS 07 (3) | | | | | +--Aurantimonadaceae (1) | | | | | | | +--Aureimonas jatrophae (1) | | | | | +--Devosiaceae (3) | | | | | | | +--Devosia (3) | | | | | | | +--Devosia sp. I507 (1) | | | | | | | +--Devosia sp. A8/3-2 (1) | | | | | | | +--Devosia sp. Root685 (1) | | | | | +--Phyllobacteriaceae (21) | | | | | | | +--Mesorhizobium microcysteis (1) | | | | | | | +--Mesorhizobium zhangyense (1) | | | | | | | +--Phyllobacterium (1) | | | | | | | | | +--Phyllobacterium sp. YR620 (1) | | | | | | | +--Mesorhizobium ephedrae (1) | | | | | | | +--Phyllobacterium zundukense (1) | | | | | | | +--Mesorhizobium waimense (1) | | | | | | | +--Pseudaminobacter arsenicus (2) | | | | | | | +--Mesorhizobium (5) | | | | | | | | | +--Mesorhizobium sp. J18 (2) | | | | | | | | | +--Mesorhizobium sp. 8 (1) | | | | | | | | | +--Mesorhizobium sp. YM1C-6-2 (1) | | | | | | | | | +--Mesorhizobium sp. Root172 (1) | | | | | | | +--Nitratireductor mangrovi (1) | | | | | | | +--Oricola cellulosilytica (1) | | | | | | | +--Aquamicrobium (1) | | | | | | | | | +--Aquamicrobium aerolatum DSM 21857 (1) | | | | | | | +--Chelativorans petroleitrophicus (1) | | | | | | | +--Mesorhizobium wenxiniae (2) | | | | | | | +--Mesorhizobium soli (1) | | | | | | | +--Pseudaminobacter soli (1) | | | | | +--Nitrobacteraceae (9) | | | | | | | +--Bradyrhizobiaceae bacterium (1) | | | | | | | +--Candidatus Afipia apatlaquensis (1) | | | | | | | +--Bradyrhizobium ivorense (4) | | | | | | | +--Bradyrhizobium (3) | | | | | | | +--Bradyrhizobium sp. Leo170 (3) | | | | | +--Rhizobiaceae (35) | | | | | | | +--Endobacterium cereale (4) | | | | | | | +--Shinella (1) | | | | | | | | | +--Shinella sp. WSJ-2 (1) | | | | | | | +--Rhizobium/Agrobacteriumgroup (29) | | | | | | | | | +--Rhizobium deserti (1) | | | | | | | | | +--Agrobacterium (1) | | | | | | | | | | | +--Agrobacterium sp. AGB01 (1) | | | | | | | | | +--Rhizobium metallidurans (1) | | | | | | | | | +--Rhizobium (19) | | | | | | | | | | | +--Rhizobium sp. JAB6 (1) | | | | | | | | | | | +--Rhizobium sp. BK275 (1) | | | | | | | | | | | +--Rhizobium sp. AC44/96 (1) | | | | | | | | | | | +--Rhizobium sp. NFR07 (3) | | | | | | | | | | | +--Rhizobium sp. BK251 (3) | | | | | | | | | | | +--Rhizobium sp. P32RR-XVIII (4) | | | | | | | | | | | +--Rhizobium sp. BG4 (1) | | | | | | | | | | | +--Rhizobium sp. SEMIA4064 (2) | | | | | | | | | | | +--Rhizobium sp. BK376 (3) | | | | | | | | | +--Neorhizobium (4) | | | | | | | | | | | +--Neorhizobium sp. SOG26 (1) | | | | | | | | | | | +--Neorhizobium sp. S3-V5DH (3) | | | | | | | | | +--Rhizobium tumorigenes (1) | | | | | | | | | +--Agrobacterium bohemicum (1) | | | | | | | | | +--Rhizobium album (1) | | | | | | | +--Sinorhizobium/Ensifergroup (1) | | | | | | | +--Ensifer (1) | | | | | | | +--Ensifer sp. M14 (1) | | | | | +--Xanthobacteraceae (3) | | | | | | | +--Starkeya nomas (1) | | | | | | | +--Xanthobacter (1) | | | | | | | | | +--Xanthobacter sp. SG618 (1) | | | | | | | +--Starkeya (1) | | | | | | | +--Starkeya sp. ORNL1 (1) | | | | | +--Lichenihabitantaceae (1) | | | | | | | +--Lichenifustis flavocetrariae (1) | | | | | +--Methylobacteriaceae (29) | | | | | | | +--Enterovirga (2) | | | | | | | | | +--Enterovirga sp. DB1703 (2) | | | | | | | +--Methylobacterium durans (3) | | | | | | | +--Microvirga (3) | | | | | | | | | +--Microvirga sp. VF16 (3) | | | | | | | +--Methylobacterium radiodurans (1) | | | | | | | +--Microvirga thermotolerans (4) | | | | | | | +--Methylobacterium (3) | | | | | | | | | +--Methylobacterium sp. WL8 (2) | | | | | | | | | +--Methylobacterium sp. GXS13 (1) | | | | | | | +--Microvirga mediterraneensis (5) | | | | | | | +--Methylobacterium symbioticum (1) | | | | | | | +--Microvirga brassicacearum (1) | | | | | | | +--Microvirga makkahensis (2) | | | | | | | +--Microvirga tunisiensis (4) | | | | | +--Chelatococcaceae (2) | | | | | | | +--Chelatococcus reniformis (2) | | | | | +--Beijerinckiaceae (2) | | | | | +--Beijerinckiaceae bacterium RH AL1 (1) | | | | | +--Methylovirgula (1) | | | | | +--Methylovirgula sp. 4M-Z18 (1) | | | +--Alphaproteobacteria bacterium (1) | | | +--Caulobacterales (5) | | | | | +--Caulobacteraceae (5) | | | | | +--Caulobacter (2) | | | | | | | +--Caulobacter sp. S6 (2) | | | | | +--Caulobacter radicis (3) | | | +--Rhodospirillales (20) | | | | | +--Acetobacteraceae (16) | | | | | | | +--Roseococcus (1) | | | | | | | | | +--Roseococcus sp. SYP-B2431 (1) | | | | | | | +--Gluconacetobacter takamatsuzukensis (1) | | | | | | | +--Acetobacter (2) | | | | | | | | | +--Acetobacter nitrogenifigens DSM 23921 = NBRC 105050 (1) | | | | | | | | | +--Acetobacter sp. DsW_54 (1) | | | | | | | +--Roseomonas acroporae (3) | | | | | | | +--Acetobacter garciniae (1) | | | | | | | +--Roseicella aquatilis (1) | | | | | | | +--Dankookia rubra (4) | | | | | | | +--Acetobacter vaccinii (1) | | | | | | | +--Roseicella aerolata (1) | | | | | | | +--Saccharibacter (1) | | | | | | | +--Saccharibacter sp. 17.LH.SD (1) | | | | | +--Azospirillaceae (2) | | | | | | | +--Azospirillum thermophilum (1) | | | | | | | +--Nitrospirillum (1) | | | | | | | +--Nitrospirillum amazonense CBAmc (1) | | | | | +--Dongiaceae (2) | | | | | +--Hypericibacter adhaerens (2) | | | +--alpha proteobacterium U9-1i (1) | | | +--Sphingomonadales (41) | | | | | +--Erythrobacteraceae (6) | | | | | | | +--Erythrobacter/Porphyrobactergroup (1) | | | | | | | | | +--Erythrobacter (1) | | | | | | | | | +--Erythrobacter sp. THAF29 (1) | | | | | | | +--Tsuneonella suprasediminis (1) | | | | | | | +--Tsuneonella aeria (1) | | | | | | | +--Croceicoccus ponticola (1) | | | | | | | +--Croceibacterium salegens (1) | | | | | | | +--Croceicoccus pelagius (1) | | | | | +--Sphingosinicellaceae (1) | | | | | | | +--Sphingosinicella humi (1) | | | | | +--Sphingomonadaceae (34) | | | | | +--Sphingomonas prati (1) | | | | | +--Citromicrobium (1) | | | | | | | +--Citromicrobium sp. RCC1897 (1) | | | | | +--Novosphingobium guangzhouense (2) | | | | | +--Novosphingobium kunmingense (1) | | | | | +--Sphingomonas panacisoli (2) | | | | | +--Sphingomonas chungangi (1) | | | | | +--Sphingomonas parva (2) | | | | | +--Rhizorhabdus dicambivorans (1) | | | | | +--Novosphingobium (3) | | | | | | | +--Novosphingobium sp. PC22D (3) | | | | | +--Sphingomonas (10) | | | | | | | +--Sphingomonas sp. YR710 (2) | | | | | | | +--Sphingomonas sp. CL5.1 (1) | | | | | | | +--Sphingomonas sp. Leaf198 (1) | | | | | | | +--Sphingomonas sp. TF3 (1) | | | | | | | +--Sphingomonas sp. JC676 (1) | | | | | | | +--Sphingomonas sp. AX6 (1) | | | | | | | +--Sphingomonas sp. G-3-2-10 (1) | | | | | | | +--Sphingomonas sp. AP4-R1 (2) | | | | | +--Sphingomonas tagetis (2) | | | | | +--Sphingomonas lycopersici (1) | | | | | +--Sphingobium nicotianae (1) | | | | | +--Sphingomonas rhizophila (1) | | | | | +--Sphingomonadaceae bacterium G21617-S1 (1) | | | | | +--Sphingomonas spermidinifaciens (1) | | | | | +--Sphingomonas solaris (1) | | | | | +--Sphingobium (2) | | | | | +--Sphingobium indicum F2 (1) | | | | | +--Sphingobium yanoikuyae ATCC 51230 (1) | | | +--Rhodobacterales (4) | | | +--Roseobacteraceae (1) | | | | | +--Celeribacter ethanolicus (1) | | | +--Paracoccaceae (3) | | | +--Allosediminivita pacifica (1) | | | +--Paracoccus siganidrum (1) | | | +--Pikeienuella piscinae (1) | +--Gammaproteobacteria (1) | | | +--Xanthomonadales (1) | | | +--Rhodanobacteraceae (1) | | | +--Dokdonella (1) | | | +--Dokdonella sp. (1) | +--Betaproteobacteria (1) | +--Burkholderiales (1) | +--Alcaligenaceae (1) | +--Verticiella sediminum (1)