# Species tree for RF00101 # Generated from Rfam version 15.00 | +--Eukaryota (13) | | | +--Metazoa (10) | | | | | +--Nematoda (1) | | | | | | | +--Chromadorea (1) | | | | | | | +--Rhabditida (1) | | | | | | | +--Panagrolaimoidea (1) | | | | | | | +--Panagrolaimidae (1) | | | | | | | +--Panagrolaimus superbus (1) | | | | | +--Chordata (7) | | | | | | | +--Craniata (7) | | | | | | | +--Vertebrata (7) | | | | | | | +--Euteleostomi (7) | | | | | | | +--Testudines (1) | | | | | | | | | +--Pleurodira (1) | | | | | | | | | +--Pelomedusidae (1) | | | | | | | | | +--Pelusios castaneus (1) | | | | | | | +--Archosauria (6) | | | | | | | +--Dinosauria (6) | | | | | | | +--Saurischia (6) | | | | | | | +--Theropoda (6) | | | | | | | +--Coelurosauria (6) | | | | | | | +--Aves (6) | | | | | | | +--Palaeognathae (1) | | | | | | | | | +--Struthioniformes (1) | | | | | | | | | +--Struthionidae (1) | | | | | | | | | +--Struthio camelus australis (1) | | | | | | | +--Neognathae (5) | | | | | | | +--Passeriformes (5) | | | | | | | +--Tyrannidae (1) | | | | | | | | | +--Neopipo cinnamomea (1) | | | | | | | +--Passeroidea (1) | | | | | | | | | +--Fringillidae (1) | | | | | | | | | +--Urocynchramus pylzowi (1) | | | | | | | +--Corvoidea (1) | | | | | | | | | +--Irenidae (1) | | | | | | | | | +--Chloropsis hardwickii (1) | | | | | | | +--Sittidae (1) | | | | | | | | | +--Tichodroma muraria (1) | | | | | | | +--Timaliidae (1) | | | | | | | +--Pteruthius melanotis (1) | | | | | +--Arthropoda (2) | | | | | +--Hexapoda (2) | | | | | +--Insecta (2) | | | | | +--Pterygota (2) | | | | | +--Neoptera (2) | | | | | +--Endopterygota (2) | | | | | +--Coleoptera (1) | | | | | | | +--Polyphaga (1) | | | | | | | +--Cucujiformia (1) | | | | | | | +--Curculionidae (1) | | | | | | | +--Scolytinae (1) | | | | | | | +--Dendroctonus ponderosae (mountain pine beetle) (1) | | | | | +--Hymenoptera (1) | | | | | +--Apocrita (1) | | | | | +--Aculeata (1) | | | | | +--Vespoidea (1) | | | | | +--Formicidae (1) | | | | | +--Formicinae (1) | | | | | +--Lasius (1) | | | | | +--Lasius niger (1) | | | +--Viridiplantae (1) | | | | | +--Streptophyta (1) | | | | | +--Embryophyta (1) | | | | | +--Tracheophyta (1) | | | | | +--Spermatophyta (1) | | | | | +--Magnoliophyta (1) | | | | | +--Liliopsida (1) | | | | | +--Poales (1) | | | | | +--Poaceae (1) | | | | | +--BEPclade (1) | | | | | +--Ehrhartoideae (1) | | | | | +--Oryzeae (1) | | | | | +--Oryza sativa Indica Group (1) | | | +--Opisthokonta (2) | | | +--Metazoa (1) | | | | | +--Eumetazoa (1) | | | | | +--Bilateria (1) | | | | | +--Deuterostomia (1) | | | | | +--Chordata (1) | | | | | +--Craniata (1) | | | | | +--Vertebrata (1) | | | | | +--Gnathostomata (1) | | | | | +--Teleostomi (1) | | | | | +--Euteleostomi (1) | | | | | +--Sarcopterygii (1) | | | | | +--Dipnotetrapodomorpha (1) | | | | | +--Tetrapoda (1) | | | | | +--Amniota (1) | | | | | +--Sauropsida (1) | | | | | +--Sauria (1) | | | | | +--Archelosauria (1) | | | | | +--Archosauria (1) | | | | | +--Dinosauria (1) | | | | | +--Saurischia (1) | | | | | +--Theropoda (1) | | | | | +--Coelurosauria (1) | | | | | +--Aves (1) | | | | | +--Neognathae (1) | | | | | +--Passeriformes (1) | | | | | +--Formicariidae (1) | | | | | +--Formicarius rufipectus (1) | | | +--Fungi (1) | | | +--Dikarya (1) | | | +--Basidiomycota (1) | | | +--Pucciniomycotina (1) | | | +--Pucciniomycetes (1) | | | +--Pucciniales (1) | | | +--Pucciniaceae (1) | | | +--Puccinia (1) | | | +--Pucciniastriiformis (1) | | | +--Puccinia striiformis f. sp. tritici PST-78 (1) | +--Bacteria (225) | | | +--Proteobacteria (153) | | | | | +--Gammaproteobacteria (153) | | | | | +--Enterobacterales (23) | | | | | | | +--Yersiniaceae (4) | | | | | | | | | +--Serratia sp. DD3 (1) | | | | | | | | | +--Ewingella (1) | | | | | | | | | | | +--Ewingella americana ATCC 33852 (1) | | | | | | | | | +--Rahnella (1) | | | | | | | | | | | +--Rahnella aquatilis CIP 78.65 = ATCC 33071 (1) | | | | | | | | | +--Chania (1) | | | | | | | | | +--Chania multitudinisentens RB-25 (1) | | | | | | | +--Pectobacteriaceae (1) | | | | | | | | | +--Sodalis praecaptivus (1) | | | | | | | +--Morganellaceae (5) | | | | | | | | | +--Moellerella (1) | | | | | | | | | | | +--Moellerella wisconsensis ATCC 35017 (1) | | | | | | | | | +--Xenorhabdus (2) | | | | | | | | | | | +--Xenorhabdus szentirmaii DSM 16338 (1) | | | | | | | | | | | +--Xenorhabdus bovienii str. kraussei Quebec (1) | | | | | | | | | +--Morganella (1) | | | | | | | | | | | +--Morganellamorganii (1) | | | | | | | | | | | +--Morganella morganii subsp. morganii KT (1) | | | | | | | | | +--Providencia (1) | | | | | | | | | +--Providencia sneebia DSM 19967 (1) | | | | | | | +--Enterobacteriaceae (7) | | | | | | | | | +--Klebsiella sp. RIT-PI-d (1) | | | | | | | | | +--Escherichia (1) | | | | | | | | | | | +--Escherichia vulneris NBRC 102420 (1) | | | | | | | | | +--unclassifiedEnterobacteriaceae (1) | | | | | | | | | | | +--Enterobacteriaceae bacterium strain FGI 57 (1) | | | | | | | | | +--Klebsiella michiganensis (1) | | | | | | | | | +--Buttiauxella (1) | | | | | | | | | | | +--Buttiauxella agrestis ATCC 33320 (1) | | | | | | | | | +--Mangrovibacter sp. MFB070 (1) | | | | | | | | | +--Atlantibacter (1) | | | | | | | | | +--Atlantibacter hermannii NBRC 105704 (1) | | | | | | | +--unclassifiedEnterobacterales (1) | | | | | | | | | +--Plesiomonas (1) | | | | | | | | | +--Plesiomonas shigelloides 302-73 (1) | | | | | | | +--Erwiniaceae (4) | | | | | | | | | +--Erwinia iniecta (1) | | | | | | | | | +--Erwinia sp. Leaf53 (1) | | | | | | | | | +--Tatumella (1) | | | | | | | | | | | +--Tatumella ptyseos ATCC 33301 (1) | | | | | | | | | +--Erwinia gerundensis (1) | | | | | | | +--Hafniaceae (1) | | | | | | | +--Hafnia (1) | | | | | | | +--Hafnia alvei FB1 (1) | | | | | +--Aeromonadales (5) | | | | | | | +--Aeromonadaceae (5) | | | | | | | +--Oceanimonas doudoroffii (1) | | | | | | | +--Oceanimonas sp. GK1 (1) | | | | | | | +--Aeromonas simiae (1) | | | | | | | +--Oceanisphaera sp. V1-41 (1) | | | | | | | +--Aeromonas hydrophila subsp. hydrophila ATCC 7966 (1) | | | | | +--Alkalimonas amylolytica (1) | | | | | +--Gallaecimonas sp. 3-C-1 (1) | | | | | +--Alteromonadales (29) | | | | | | | +--Pseudoalteromonadaceae (3) | | | | | | | | | +--Pseudoalteromonas ulvae (1) | | | | | | | | | +--Pseudoalteromonas ruthenica (1) | | | | | | | | | +--Pseudoalteromonas sp. KDW4 (1) | | | | | | | +--Colwelliaceae (3) | | | | | | | | | +--Thalassomonas actiniarum (1) | | | | | | | | | +--Thalassomonas agarivorans (1) | | | | | | | | | +--Colwellia sp. BCw111 (1) | | | | | | | +--Shewanellaceae (12) | | | | | | | | | +--Shewanella oneidensis MR-1 (1) | | | | | | | | | +--Shewanella sediminis HAW-EB3 (1) | | | | | | | | | +--Shewanella sp. P1-14-1 (1) | | | | | | | | | +--Shewanella loihica PV-4 (1) | | | | | | | | | +--Shewanella fodinae (1) | | | | | | | | | +--Shewanella algae (1) | | | | | | | | | +--Shewanella violacea DSS12 (1) | | | | | | | | | +--Shewanella amazonensis SB2B (1) | | | | | | | | | +--Shewanella frigidimarina NCIMB 400 (1) | | | | | | | | | +--Shewanella woodyi ATCC 51908 (1) | | | | | | | | | +--Shewanella pealeana ATCC 700345 (1) | | | | | | | | | +--Shewanella mangrovi (1) | | | | | | | +--Alteromonadaceae (6) | | | | | | | | | +--Catenovulum maritimum (1) | | | | | | | | | +--Paraglaciecola (1) | | | | | | | | | | | +--Paraglaciecola psychrophila 170 (1) | | | | | | | | | +--Alishewanella (1) | | | | | | | | | | | +--Alishewanella agri BL06 (1) | | | | | | | | | +--Glaciecola sp. BSs20135 (1) | | | | | | | | | +--Alteromonas confluentis (1) | | | | | | | | | +--Agarivorans (1) | | | | | | | | | +--Agarivorans albus MKT 106 (1) | | | | | | | +--Idiomarinaceae (5) | | | | | | | +--Idiomarina planktonica (1) | | | | | | | +--Pseudidiomarina salinarum (1) | | | | | | | +--Idiomarina sp. 10-D-4 (1) | | | | | | | +--Idiomarina loihiensis L2TR (1) | | | | | | | +--Idiomarina seosinensis (1) | | | | | +--Alteromonadales bacterium MLST1 (1) | | | | | +--Vibrionales (24) | | | | | | | +--Vibrionaceae (24) | | | | | | | +--Photobacterium jeanii (1) | | | | | | | +--Vibrio sp. G21 (1) | | | | | | | +--Photobacterium lipolyticum (1) | | | | | | | +--Vibrio sp. qd031 (1) | | | | | | | +--Vibrio navarrensis (1) | | | | | | | +--Photobacterium profundum SS9 (1) | | | | | | | +--Enterovibrio coralii (1) | | | | | | | +--Photobacterium sp. Gung47 (1) | | | | | | | +--Vibrio sp. S2757 (1) | | | | | | | +--Vibrio nigripulchritudo (1) | | | | | | | +--Photobacterium ganghwense (1) | | | | | | | +--Photobacterium proteolyticum (1) | | | | | | | +--Salinivibrio sp. KP-1 (1) | | | | | | | +--Vibrio fischeri ES114 (1) | | | | | | | +--Photobacterium halotolerans (1) | | | | | | | +--Photobacterium sp. CECT 7614 (1) | | | | | | | +--Grimontia hollisae CIP 101886 (1) | | | | | | | +--Vibrio (4) | | | | | | | | | +--Vibrio rumoiensis 1S-45 (1) | | | | | | | | | +--Vibrio ezurae NBRC 102218 (1) | | | | | | | | | +--Vibrio genomosp. F6 str. FF-238 (1) | | | | | | | | | +--Vibrio proteolyticus NBRC 13287 (1) | | | | | | | +--Enterovibrio sp. sw014 (1) | | | | | | | +--Photobacterium damselae subsp. damselae CIP 102761 (1) | | | | | | | +--Photobacterium aquimaris (1) | | | | | +--Celerinatantimonadaceae (1) | | | | | | | +--Celerinatantimonas diazotrophica (1) | | | | | +--Enterobacteriales (63) | | | | | | | +--Enterobacteriaceae (63) | | | | | | | +--Serratia fonticola (1) | | | | | | | +--Brenneria rubrifaciens (1) | | | | | | | +--Dickeya dadantii 3937 (1) | | | | | | | +--Shigella boydii CDC 3083-94 (1) | | | | | | | +--Sodalis glossinidius str. 'morsitans' (1) | | | | | | | +--Xenorhabdus japonica (1) | | | | | | | +--Cedecea neteri (1) | | | | | | | +--Serratia sp. ATCC 39006 (1) | | | | | | | +--Escherichia coli 55989 (1) | | | | | | | +--Salmonella (1) | | | | | | | | | +--Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1) | | | | | | | +--Trabulsiella odontotermitis (1) | | | | | | | +--Pantoea ananatis LMG 20103 (1) | | | | | | | +--Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- (1) | | | | | | | +--Pectobacterium atrosepticum SCRI1043 (1) | | | | | | | +--Xenorhabdus innexi (1) | | | | | | | +--Escherichia coli E24377A (1) | | | | | | | +--Escherichia coli O157:H7 (1) | | | | | | | +--Serratia rubidaea (1) | | | | | | | +--Salmonella enterica subsp. arizonae (1) | | | | | | | +--Escherichia coli K-12 (1) | | | | | | | +--Biostraticola tofi (1) | | | | | | | +--Pantoea agglomerans (1) | | | | | | | +--Pantoea vagans (1) | | | | | | | +--Shigella dysenteriae Sd197 (1) | | | | | | | +--Yersinia ruckeri (1) | | | | | | | +--Escherichia coli O83:H1 str. NRG 857C (1) | | | | | | | +--Serratia odorifera DSM 4582 (1) | | | | | | | +--Shigella sonnei Ss046 (1) | | | | | | | +--Escherichia coli O127:H6 str. E2348/69 (1) | | | | | | | +--Kluyvera cryocrescens (1) | | | | | | | +--Erwinia tasmaniensis (1) | | | | | | | +--Gibbsiella quercinecans (1) | | | | | | | +--Xenorhabdus koppenhoeferi (1) | | | | | | | +--Tatumella morbirosei (1) | | | | | | | +--Enterobacter sp. 638 (1) | | | | | | | +--Enterobacter gergoviae (1) | | | | | | | +--Citrobacter freundii (1) | | | | | | | +--Xenorhabdus cabanillasii (1) | | | | | | | +--Arsenophonus nasoniae (son-killer infecting Nasonia vitripennis) (1) | | | | | | | +--Escherichia coli HS (1) | | | | | | | +--Escherichia coli APEC O1 (1) | | | | | | | +--Escherichia coli BL21(DE3) (1) | | | | | | | +--Photorhabdus luminescens subsp. laumondii TTO1 (1) | | | | | | | +--Enterobacter (1) | | | | | | | | | +--Enterobacter cloacae SCF1 (1) | | | | | | | +--Serratia ficaria (1) | | | | | | | +--Citrobacter koseri ATCC BAA-895 (1) | | | | | | | +--Escherichia coli CFT073 (1) | | | | | | | +--Erwinia billingiae (1) | | | | | | | +--Shigella flexneri 2a str. 301 (1) | | | | | | | +--Yersinia pestis CO92 (1) | | | | | | | +--Edwardsiella hoshinae (1) | | | | | | | +--Brenneria goodwinii (1) | | | | | | | +--Cronobacter sakazakii ATCC BAA-894 (1) | | | | | | | +--Erwinia mallotivora (1) | | | | | | | +--Providencia stuartii (1) | | | | | | | +--Serratia (1) | | | | | | | | | +--Serratia symbiotica str. Tucson (1) | | | | | | | +--Citrobacter rodentium ICC168 (1) | | | | | | | +--Erwinia tracheiphila (1) | | | | | | | +--Escherichia coli S88 (1) | | | | | | | +--Escherichia blattae DSM 4481 (1) | | | | | | | +--Salmonella enterica subsp. enterica serovar Poona (1) | | | | | | | +--Klebsiella pneumoniae subsp. ozaenae (1) | | | | | | | +--Lonsdalea quercina (1) | | | | | +--Chromatiales (5) | | | | | +--Chromatiaceae (5) | | | | | +--Pararheinheimera mesophila (1) | | | | | +--Rheinheimera sp. E407-8 (1) | | | | | +--Rheinheimera sp. SA_1 (1) | | | | | +--Rheinheimera sp. F8 (1) | | | | | +--Arsukibacterium sp. MJ3 (1) | | | +--Pseudomonadota (72) | | | +--Gammaproteobacteria (72) | | | +--Alteromonadales (32) | | | | | +--Ferrimonadaceae (1) | | | | | | | +--Paraferrimonas haliotis (1) | | | | | +--Pseudoalteromonadaceae (1) | | | | | | | +--Psychrosphaera ytuae (1) | | | | | +--Colwelliaceae (6) | | | | | | | +--Thalassotalea (1) | | | | | | | | | +--Thalassotalea sp. LPB0316 (1) | | | | | | | +--Thalassotalea marina (1) | | | | | | | +--Thalassotalea mangrovi (1) | | | | | | | +--Thalassotalea algicola (1) | | | | | | | +--Thalassotalea piscium (1) | | | | | | | +--Thalassotalea euphylliae (1) | | | | | +--Shewanellaceae (6) | | | | | | | +--Shewanella aestuarii (1) | | | | | | | +--Shewanella salipaludis (1) | | | | | | | +--Shewanella gelidii (1) | | | | | | | +--Shewanella (2) | | | | | | | | | +--Shewanella sp. SNU WT4 (1) | | | | | | | | | +--Shewanella sp. XMDDZSB0408 (1) | | | | | | | +--Shewanella cyperi (1) | | | | | +--Idiomarinaceae (5) | | | | | | | +--Pseudidiomarina piscicola (1) | | | | | | | +--Aliidiomarina soli (1) | | | | | | | +--Idiomarina tyrosinivorans (1) | | | | | | | +--Idiomarina (1) | | | | | | | | | +--Idiomarina sp. MD25a (1) | | | | | | | +--Pseudidiomarina indica (1) | | | | | +--Echinimonadaceae (2) | | | | | | | +--Neiella litorisoli (1) | | | | | | | +--Echinimonas agarilytica (1) | | | | | +--Psychromonadaceae (1) | | | | | | | +--Corallincola holothuriorum (1) | | | | | +--Alteromonadaceae (10) | | | | | +--Alteromonadaceae bacterium M269 (1) | | | | | +--Bowmanella (1) | | | | | | | +--Bowmanella sp. JS7-9 (1) | | | | | +--Saliniradius amylolyticus (1) | | | | | +--Paraglaciecola (1) | | | | | | | +--Paraglaciecola sp. MB-3u-78 (1) | | | | | +--Saccharobesus litoralis (1) | | | | | +--Aliiglaciecola (1) | | | | | | | +--Aliiglaciecola sp. M165 (1) | | | | | +--Neptunicella marina (1) | | | | | +--Alteromonas/Salinimonasgroup (3) | | | | | +--Alteromonas (1) | | | | | | | +--Alteromonas sp. KUL49 (1) | | | | | +--Salinimonas iocasae (1) | | | | | +--Alteromonas pelagimontana (1) | | | +--Vibrionales (5) | | | | | +--Vibrionaceae (5) | | | | | +--Vibrio paucivorans (1) | | | | | +--Veronia nyctiphanis (1) | | | | | +--Vibrio astriarenae (1) | | | | | +--Vibrio gelatinilyticus (1) | | | | | +--Vibrio (1) | | | | | +--Vibrio tapetis subsp. tapetis (1) | | | +--Enterobacterales (32) | | | | | +--Yersiniaceae (2) | | | | | | | +--Rouxiella badensis (1) | | | | | | | +--Chimaeribacter arupi (1) | | | | | +--Enterobacteriaceae (9) | | | | | | | +--Jejubacter calystegiae (1) | | | | | | | +--Kosakonia (1) | | | | | | | | | +--Kosakonia cowanii JCM 10956 = DSM 18146 (1) | | | | | | | +--Citrobacter (1) | | | | | | | | | +--Citrobacter sp. JGM124 (1) | | | | | | | +--Kluyvera genomosp. 3 (1) | | | | | | | +--Klebsiella/Raoultellagroup (2) | | | | | | | | | +--Klebsiella indica (1) | | | | | | | | | +--Klebsiella (1) | | | | | | | | | +--Klebsiellapneumoniae (1) | | | | | | | | | +--Klebsiella pneumoniae subsp. pneumoniae (strain HS11286) (1) | | | | | | | +--Enterobacteriaceae bacterium RIT714 (1) | | | | | | | +--Enterobacteriaceaeincertaesedis (1) | | | | | | | | | +--ant,tsetse,mealybug,aphid,etc.endosymbionts (1) | | | | | | | | | +--Symbiopectobacterium (1) | | | | | | | | | +--Candidatus Symbiopectobacterium sp. PLON1 (1) | | | | | | | +--Tenebrionibacter/Tenebrionicolagroup (1) | | | | | | | +--Tenebrionibacter intestinalis (1) | | | | | +--Enterobacterales bacterium CwR94 (1) | | | | | +--Hafniaceae (1) | | | | | | | +--Enterobacillus tribolii (1) | | | | | +--Pectobacteriaceae (2) | | | | | | | +--Affinibrenneria salicis (1) | | | | | | | +--Acerihabitans arboris (1) | | | | | +--Morganellaceae (5) | | | | | | | +--Providencia (1) | | | | | | | | | +--Providencia heimbachae ATCC 35613 (1) | | | | | | | +--Proteus (1) | | | | | | | | | +--Proteus myxofaciens ATCC 19692 (1) | | | | | | | +--Arsenophonus (3) | | | | | | | +--Arsenophonus endosymbiont of Aphis craccivora (1) | | | | | | | +--unclassifiedArsenophonus (1) | | | | | | | | | +--Arsenophonus endosymbiont of Bemisia tabaci Q2 (1) | | | | | | | +--Arsenophonus endosymbiont of Aleurodicus floccissimus (1) | | | | | +--Erwiniaceae (10) | | | | | | | +--Pantoea alhagi (1) | | | | | | | +--Erwinia sorbitola (1) | | | | | | | +--Erwiniaceae bacterium PD-1 (1) | | | | | | | +--Erwinia (2) | | | | | | | | | +--Erwinia sp. 198 (1) | | | | | | | | | +--Erwinia sp. OLSSP12 (1) | | | | | | | +--Pantoea (4) | | | | | | | | | +--Pantoea sp. M_5 (1) | | | | | | | | | +--Pantoea sp. Nvir (1) | | | | | | | | | +--Pantoea sp. Eser (1) | | | | | | | | | +--Pantoea sp. Aalb (1) | | | | | | | +--[Pantoea] beijingensis (1) | | | | | +--Bruguierivoracaceae (2) | | | | | +--Sodalis ligni (1) | | | | | +--Sodalis (1) | | | | | +--Sodalis-like endosymbiont of Proechinophthirus fluctus (1) | | | +--Chromatiales (2) | | | | | +--Chromatiaceae (2) | | | | | +--Rheinheimera salexigens (1) | | | | | +--Rheinheimera (1) | | | | | +--Rheinheimera sp. D18 (1) | | | +--Oceanospirillales (1) | | | +--Endozoicomonadaceae (1) | | | +--Endozoicomonas (1) | | | +--Endozoicomonas sp. G2_1 (1) | +--Plautia stali symbiont (1)