Seed sequence alignment for RF03161

URS0001A238FD_37752/1-64 Flavobacterium hibernum 0.0 URS0001A238FD_1270193/1-64 Flavobacterium sp. KJJ 0.0 URS0001A243D4_746697/1-69 Aequorivita sublithincola DSM 14238 0.0 URS0001A24277_1120951/1-68 Aequorivita capsosiphonis DSM 23843 0.0 URS0001A23D97_12908/1-68 unclassified sequences 0.0 URS0001A23A04_12908/1-68 unclassified sequences 0.0 URS0001A249B8_12908/1-68 unclassified sequences 0.0 URS0001A249B8_171194/1-68 Vitellibacter vladivostokensis 0.0 URS0001A24672_12908/1-68 unclassified sequences 0.0 URS0001A24A0C_12908/1-68 unclassified sequences 0.0 URS0001A2416A_12908/1-68 unclassified sequences 0.0 URS0001A23AEC_12908/1-68 unclassified sequences 0.0 URS0001A2372E_12908/1-68 unclassified sequences 0.0 URS0001A23AA8_12908/1-56 unclassified sequences 0.0 URS0001A23EEB_12908/1-56 unclassified sequences 0.0 URS0001A23F12_12908/1-56 unclassified sequences 0.0 URS0001A2350E_1296415/1-66 Aquimarina pacifica 0.0 URS0001A2497D_1443665/1-65 Aquimarina macrocephali JAMB N27 0.0 URS0001A24947_1317122/1-65 Aquimarina atlantica 0.0 URS0001A24947_1296416/1-65 Aquimarina megaterium XH134 0.0 URS0001A242D3_1121006/1-66 Aquimarina latercula DSM 2041 0.0 URS0001A23E74_1121007/1-67 Aquimarina muelleri DSM 19832 0.0 URS0001A2464D_1121899/1-65 Flavobacterium suncheonense GH29-5 = DSM 17707 0.0 URS0001A240AE_1107311/1-65 Flavobacterium sp. DK69 0.0 URS0001A23D93_1041826/1-65 Flavobacterium columnare ATCC 49512 0.0 URS0001A247F5_12908/1-65 unclassified sequences 0.0 URS0001A2457E_12908/1-65 unclassified sequences 0.0 URS0001A243DC_12908/1-66 unclassified sequences 0.0 URS0001A24641_12908/1-66 unclassified sequences 0.0 URS0001A23C16_926559/1-66 Joostella marina DSM 19592 0.0
UAAUU.UUGCACCG.............UCUUACA...........AAAGA.................UGUACGA.....................................CUAC.AUAAA.AAUCAU-...UA-AA..UAAUAUUGGAAUG UAAUU.UUGCACCG.............UCUUACA...........AAAGA.................UGUACGA.....................................CUAC.AUAAA.AAUCAU-...UA-AA..UAAUAUUGGAAUG UACUU.UUGCAACC.............UUGAUUAuc.........AAAAC...............ggUAAUCGA.....................................-UAC.AUAAA.AAUCAUU...UACAC..AAAUAUUAGCAUG UAUCU.UUGCCGCC.............UUGAUUAuc.........AAAAC...............ggUAGUCAG.....................................-UAC.AUAAU.AAUCAUU...UU-AA..CAAUAUUGGCAUG UACUU.UUGCAGCC.............UUGAUUAuc.........AAAAC...............ggUAAUCAG.....................................-UAC.AUAAA.AAUCAUU...UU-AA..UAAUAUUGGCAUG UACUU.UUGCACCC.............UUGAUUAuc.........AAAAC...............ggUAGUCAG.....................................-UAC.AUAAA.AAUCAUU...UU-AA..UAAUAUUGGCAUG UACUU.UUGCACCC.............UUGAUUAuc.........AAAAA...............ggUAGUCAG.....................................-UAC.AUAAA.AAUCAUU...UU-AA..CAAUAUUGGCAUG UACUU.UUGCACCC.............UUGAUUAuc.........AAAAA...............ggUAGUCAG.....................................-UAC.AUAAA.AAUCAUU...UU-AA..CAAUAUUGGCAUG UACUU.UUGCAACC.............UUGAUUAuca........AAA--..............uggUAAUCAG.....................................-UAC.AUAAA.AAUCAUU...UU-AA..UAAUAUUGGCAUG UACUU.UUGCAACC.............UUGAUUAuca........AAA--..............uggUAAUCAG.....................................-UAC.AUAAA.AAUCAUU...UU-AA..CAAUAUUGGCAUG UACUU.UUGCAGCC.............UUGAUUAuca........AAA--..............uggUAAUCAG.....................................-UAC.AUAAA.AAUCAUU...UU-AA..CAAUAUUGGCAUG UACUU.UUGCGGCC.............UUGAUUAuca........AAA--..............uggUAGUCAG.....................................-UAC.AUAAA.AAUCAUU...UU-AA..CAAUAUUGGCAUG UACUU.UUGCAGCC.............UUGAUUAuca........AAA--..............uggUAGUCAG.....................................-UAC.AUAAA.AAUCAUU...UU-AA..CAAUAUUGGCAUG UAUAU.UUGCCGCC.............UU-----...........AUAUA.................-----AA....................................cAUAC.AUAAU.AAUUAUU...UA-AA..UAAUAUUAGCAUG UAUAU.UUGCCGUC.............UU-----...........AUUUA.................-----AG....................................uAUAC.AUAAU.AAUUAUU...GA-AC..UAAUAUUGGCAUG UAUAU.UUGCCACC.............UU-----...........AUUUA.................-----AG....................................cAUAC.AUAAU.AAUUAUU...GA-AC..UAAUAUUGGCAUG UAUAU.UUGCACGU.............UAAUAGCa..........AAA--................uGCUAUUA....................................uAUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCACGC.............UAAUAGC...........AAAGA.................GCUAUUU.....................................AUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCACGC.............UAAUAGC...........AAAGA.................GCUAUUG.....................................AUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCACGC.............UAAUAGC...........AAAGA.................GCUAUUG.....................................AUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCACGC.............UGAUAGCa..........GAA--................uGCUAUUU.....................................AUAC.AUAAA.AAUCAUU...UAAAA..UAAUAUUGGAAUG UAUAU.UUGCACGC.............UCAUAGUa..........AAG--................uGCUAUGG...................................acAUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGAAUG UACCU.UUGCACCCg............UAUUGAGa..........UCG--................uCUCAAUC.....................................-UGC.AUAAU.AAUCAUU...UU-AA..UAAUAUUAGCAUG UAACU.UUGCACCCg............UAUUGAGa..........CUG--................uCUCAAUU.....................................-UAC.AUAAU.AAUCAUU...UU-AA..AAAUAUUAGCAUG UAAAU.UUGCGUCCg............UAUCGAGa..........AAA--................uCUCGGUC.....................................-UAC.AUAAU.AAUCAUU...UA-AA..UAAUAUUAGCAUG UAAAU.UUGCACCCg............UAUUGAGa..........CAA--................uCUCAAUC.....................................-UAC.AUAAU.AAUCAUU...UA-AA..UAAUAUUAGCAUG UAAAU.UUGCACCCg............UAUUGAG...........AUAAA.................CUCAAUC.....................................-UAC.AUAAU.AAUCAUU...UA-AA..UAAUAUUAGCAUG UAUAU.UUGCGCCU.............UGAUAUG...........AACGA.................CGUAUCA.....................................UUAC.AUAAU.AAUCAUU...UACAA..UAAUAUUGGCAUG UAAUU.UUGCACUC.............GAAUCCGa..........GAA--................uCGGAAUU....................................cAUAC.AUAAA.AAUCAUU...AA-AC..AAAUAUUGGAAUG UAUCU.UUGCGCCC.............ACUGAUAga.........AAA--...............ucUAUCAAA.....................................-UAC.AUAAG.AAUCAUU...UA-AA..UAAUAUUGGCAUG

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