Rfam: Seed sequence alignment for RF03161

URS0001A2352B_755732/1-66 Fluviicola taffensis DSM 16823 0.0 URS0001A24595_12908/1-65 unclassified sequences 0.0 URS0001A24882_12908/1-63 unclassified sequences 0.0 URS0001A23F80_12908/1-65 unclassified sequences 0.0 URS0001A23E6C_12908/1-65 unclassified sequences 0.0 URS0001A2382E_1416760/1-71 Myroides odoratimimus H1bi 0.0 URS0001A2382E_883154/1-71 Myroides odoratimimus CIP 101113 0.0 URS0001A2382E_883151/1-71 Myroides odoratimimus CCUG 12700 0.0 URS0001A23E29_480520/1-71 Myroides profundi 0.0 URS0001A23E5B_883152/1-71 Myroides odoratimimus CCUG 12901 0.0 URS0001A23C8B_703342/1-69 Myroides sp. JS-08 0.0 URS0001A23692_1094466/1-65 Flavobacterium indicum GPTSA100-9 = DSM 17447 0.0 URS0001A24411_12908/1-67 unclassified sequences 0.0 URS0001A23C71_12908/1-67 unclassified sequences 0.0 URS0001A23444_12908/1-77 unclassified sequences 0.0 URS0001A23506_12908/1-60 unclassified sequences 0.0 URS0001A2328E_12908/1-68 unclassified sequences 0.0 URS0001A24674_12908/1-68 unclassified sequences 0.0 URS0001A23ED4_12908/1-68 unclassified sequences 0.0 URS0001A2462B_12908/1-69 unclassified sequences 0.0 URS0001A246A1_12908/1-69 unclassified sequences 0.0 URS0001A23CAC_12908/1-69 unclassified sequences 0.0 URS0001A23AC9_12908/1-69 unclassified sequences 0.0 URS0001A23AAA_12908/1-69 unclassified sequences 0.0 URS0001A23F1F_12908/1-69 unclassified sequences 0.0 URS0001A23EE0_12908/1-69 unclassified sequences 0.0 URS0001A23BF1_12908/1-60 unclassified sequences 0.0 URS0001A246DA_12908/1-57 unclassified sequences 0.0 URS0001A239D4_12908/1-57 unclassified sequences 0.0 URS0001A236C8_12908/1-53 unclassified sequences 0.0

UAUCU.UUGCAUCGu............AAUUCCAa..........AAG--................uUGGGGUU.....................................CUAC.AUAAU.AAUCAUU...CA-AG..UAAUAUUGGCAUG UAUCU.UUGCAAAU.............CGAAAGA...........UAC--.................UCUUUCG....................................uUUAC.AUAAC.AAUCAUU...UACAA..CAAUAUUAGCAUG UAUUU.UUGCACUU.............UGAUAGA...........AAA--.................UCUAUCA.....................................UUGC.AUAAU.AAUUAUU...GA-AA..CAAUAUUGGCAUG UAUAU.UUGCGCGC.............UGAUAG-...........AAAGA.................-CUAUCA...................................aaUUAC.AUAAU.AAUCAUU...GA-AA..UAAUAUUGGCAUG UAUAU.UUGCACGC.............UGAUAGA...........AAG--.................UCUAUCA...................................aaUUAC.AUAAU.AAUUAUU...GA-AA..UAAUAUUGGCAUG UACCU.UUGCAAACgu...........AAAUAUGg..........AUACA................cCAUAUUU....................................cAUGC.AUAAA.AAUCAUU...AAAAA..UAAUAUUGGCAUG UACCU.UUGCAAACgu...........AAAUAUGg..........AUACA................cCAUAUUU....................................cAUGC.AUAAA.AAUCAUU...AAAAA..UAAUAUUGGCAUG UACCU.UUGCAAACgu...........AAAUAUGg..........AUACA................cCAUAUUU....................................cAUGC.AUAAA.AAUCAUU...AAAAA..UAAUAUUGGCAUG UACCU.UUGCAAACgu...........AAAUACGg..........AUACA................cCGUAUUU....................................cAUGC.AUAAA.AAUCAUU...AAAAA..UAAUAUUGGCAUG UACCU.UUGCAAACgu...........AAAUAUGg..........AUACA................cCGUAUUU....................................cAUGC.AUAAA.AAUCAUU...AAAAA..UAAUAUUGGCAUG UACCU.UUGCAAACgu...........AAAUAUGg..........AAAUA................cCAUAUUA....................................uAUAC.AUAAA.AAUCAU-...UA-AA..UAAUAUUAGCAUG UACCU.UUGCACCCg............UAUUGAG...........AAACA.................CUCAAUU.....................................-UAC.AUAAU.AAUUAUU...UA-AG..GAAUAUUAGCAUG UAGCU.UUGCACAC.............GAAUUGCg..........AAAAC................cGCA-UUU....................................uCUAC.AUAAU.AAUCAUU...UA-AA..UAAUAUUAGCAUG UAGCU.UUGCACAC.............GAAUUACg..........AAAAC................cGUA-UUU....................................uCUAC.AUAAU.AAUCAUU...UA-AA..UAAUAUUAGCAUG UAUAU.UUGCAUCU.............UCAAUUU.uuccg.....AAAAU...........cggauuGAAUUGA.....................................AUAC.AUAAA.AAUCAUU...UAAAU..AAAUAUUGGCAUG UAUAU.UUGCUUUAc............AUU----...........UAU--.................----AAU..................................uuuUUAC.AUAAA.AAUCAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCCGCC.............UGAUUAUga.........ACG--...............ucAUAAUUA.....................................UUGC.AUAAA.AAUUAUU...UAAAC..AAAUAUUGGAAUG UAUAU.UUGCCGCC.............UGAUUAUg..........AUCGC................cGUAAUCA.....................................AUGC.AUAAA.AAUUAUU...UAAAU..AAAUAUUGGAAUG UAUAU.UUGCCCUU.............CAAUUUUg..........AGAAA................cAAGAUUG....................................uUAGC.AUAAA.AAUUAUU...UA-AA..AAAUAUUGGAAUG UAUAU.UUGCACCU.............CAAUUCUg..........AGAGC................cAGAAUUG....................................uUUGC.AUAAA.AAUUAUU...UAAAC..AAAUAUUGGAAUG UAUAU.UUGCCCCU.............CAAUUCUg..........AGAGC................cAGAAUUG....................................uUUGC.AUAAA.AAUUAUU...UAAAC..AAAUAUUGGAAUG UAUAU.UUGCCCCU.............CAAUUCUg..........AGAGC................cAGAAUUA....................................uUUGC.AUAAA.AAUUAUU...UAAAA..AAAUAUUGGAAUG UAUAU.UUGCCCCU.............CAAUUCUga.........AAG--...............ucAGAAUUG....................................uUUGC.AUAAA.AAUUAUU...UAAAC..AAAUAUUGGAAUG UAUAU.UUGCCCCU.............CAGUUCUga.........AAG--...............ucAGAAUUG....................................uUUGC.AUAAA.AAUUAUU...UAAAC..AAAUAUUGGAAUG UAUAU.UUGCUCCU.............CAAUUCUg..........AUCGA................cAGAAUUG....................................uUUAC.AUAAA.AAUUAUU...UAAAC..AAAUAUUGGAAUG UAUAU.UUGCCCCU.............CAAUUCUg..........AGCGA................cAGAAUUG....................................uUUAC.AUAAA.AAUUAUU...UAAAU..AAAUAUUGGAAUG UACCU.UUGUGGGU.............CGUU---...........AAAA-.................---AACG...................................aaUUAC.AUAAU.AAUCAUU...AA-AA..UAAUAUUUGCAUG UAUAU.UUGCGGCU.............UUA----...........UUAG-.................----UAA.....................................AUAC.AUAAA.AACUAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCAGCU.............UUA----...........UUAG-.................----UAA.....................................AUAC.AUAAA.AACUAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCGGCU.............UU-----...........-UAA-.................-----AA.....................................CUAC.AUAAA.AAUUAUU...AA-AU..UGAUAUUGGCAUG