Rfam: Seed sequence alignment for RF03161

URS0001A24A02_12908/1-68 unclassified sequences 0.0 URS0001A241B5_1341181/1-69 Flavobacterium limnosediminis JC2902 0.0 URS0001A23CC4_1121912/1-67 Gelidibacter mesophilus DSM 14095 0.0 URS0001A243EA_12908/1-66 unclassified sequences 0.0 URS0001A2450D_12908/1-69 unclassified sequences 0.0 URS0001A24964_12908/1-69 unclassified sequences 0.0 URS0001A23D26_12908/1-69 unclassified sequences 0.0 URS0001A24123_12908/1-69 unclassified sequences 0.0 URS0001A234EC_12908/1-69 unclassified sequences 0.0 URS0001A239FC_12908/1-69 unclassified sequences 0.0 URS0001A2482E_12908/1-69 unclassified sequences 0.0 URS0001A2477C_12908/1-67 unclassified sequences 0.0 URS0001A23C1D_12908/1-64 unclassified sequences 0.0 URS0001A23364_12908/1-64 unclassified sequences 0.0 URS0001A23340_12908/1-68 unclassified sequences 0.0 URS0001A249D6_12908/1-68 unclassified sequences 0.0 URS0001A23FBF_12908/1-68 unclassified sequences 0.0 URS0001A23895_12908/1-66 unclassified sequences 0.0 URS0001A24AC7_1454201/1-91 Nonlabens marinus S1-08 0.0 URS0001A24A6C_12908/1-64 unclassified sequences 0.0 URS0001A23E56_12908/1-66 unclassified sequences 0.0 URS0001A23295_12908/1-64 unclassified sequences 0.0 URS0001A23295_1122226/1-64 Mesonia mobilis DSM 19841 0.0 URS0001A24293_12908/1-61 unclassified sequences 0.0 URS0001A23818_12908/1-69 unclassified sequences 0.0 URS0001A233B5_12908/1-69 unclassified sequences 0.0 URS0001A234D8_12908/1-68 unclassified sequences 0.0 URS0001A241FC_12908/1-68 unclassified sequences 0.0 URS0001A2376C_12908/1-68 unclassified sequences 0.0 URS0001A243CA_12908/1-56 unclassified sequences 0.0

UAUCU.UUGCACCCg............CUACUCAa..........ACGAC................uUGAGUAC.....................................GUAC.AUAAA.AAUUAUU...UA-UA..CAAUAUUGGCAUG UAUUU.UUGCGCCAc............GUUUUAGga.........UAG--...............ucCUAUUUC....................................gUUAC.AUAAU.AAUCAUU...UA-AA..GAAUAUUUGCAUG UAUCU.UUGCACCG.............UGAUUCG...........AAAAC.................CGAGUUG....................................cGUAC.AUAAC.AAUCAUU...UACAA..UAAUAUUAGCAUG UAUAU.UUGCACCU.............UGAUUCGa..........AAA--................uCGGGUCU.....................................GUAC.AUAAC.AAUCAUU...UACAA..UAAUAUUAGCAUG UAUCU.UUGCACCC.............GCUAUUCc..........UAUGAgu..............gGAAUUGC.....................................-UAC.AUAAU.AAUUAUU...UAACU..AAAUAUUAGCAUG UAUCU.UUGCACCC.............GCUAUUCc..........UAUGAgu..............gGAAUUGC.....................................-UAC.AUAAU.AAUCAUU...UAACU..AAAUAUUGGCAUG UAUCU.UUGCAUCC.............GCUAUUCc..........UAUGAgu..............gGAAUUGC.....................................-UAC.AUAAU.AAUUAUU...UAACU..AAAUAUUGGCAUG UAUCU.UUGCACCC.............GCUAUUCc..........UAUGAgu..............gGAAUUGC.....................................-UAC.AUAAU.AAUUAUU...UAACU..AAAUAUUGGCAUG UAUCU.UUGCACCC.............GCUGUUCc..........UACGAgu..............gGAAUUGC.....................................-UAC.AUAAU.AAUUAUU...UAACU..AAAUAUUGGCAUG UAUCU.UUGCACCC.............GCUAUUCc..........UACGAgu..............gGAAUUGC.....................................-UAC.AUAAU.AAUUAUU...UAACU..AAAUAUUGGCAUG UAUAU.UUGCACCC.............GCUAUUCa..........UAUGAgu..............uGAGUGGC.....................................-UAC.AUAAA.AAUUAUU...UAAUC..AAAUAUUGGCAUG UACUU.UUGCCGCU.............CGAAUCAc..........ACGAA................gUGAGUCG.....................................GUAC.AUAAA.AAUCAUU...UU-AA..UAAUAUUGGCAUG UACAU.UUGCAACU.............UUGAUAG...........AAAAG.................CUAUCAA.....................................-UAC.AUAAA.AAUCAUU...GA-AA..UAAUAUUGGCAUG UACAU.UUGCAACU.............UUGAUAG...........AAAAA.................CUAUCAA.....................................-UAC.AUAAA.AAUCAUU...GA-AA..UAAUAUUGGCAUG UAUUU.UUGCCGCU.............CGGUAAUc..........AAAA-................gGUUAUCA...................................acAUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGCAUG UAUUU.UCGCCGCU.............CGAUAAUc..........ACAA-................gGUUAUCA...................................acAUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGCAUG UAUUU.UCGCGGCU.............CGAUAAUc..........ACAA-................gGUUAUCA...................................acAUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGCAUG UAUCU.UUGCGCCC.............UCAAACGg..........AUAAA................cCGUUUAG.....................................-UAC.AUAAA.AAUCAUU...UA-AA..GAAUAUUGGCAUG UAUCU.UUGCAGCC.............GCUU-AGgga........AUGAA..............uccCGAAGGCacc......gucaga..aaa.......ucugac....AUAC.AUAAU.AUUCAUUauaUA-AA..UAAUUUUGGCAUG UACUU.UUGCGCCC.............GUAUCCG...........AGAAA.................CGGCUAC.....................................-UAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUUGCAUG UAUAU.UUGCCCGU.............CUAAUAAu..........CAA--................aUUAUUAG.....................................CUAC.AUAAU.AAUUAUU...UACAA..UAAUAUUGGCAUG UAUCU.UUGCCGCU.............UCGAUAG...........AAAAA.................CUAUCGG.....................................-UAC.AUAAU.AAUCAUU...GA-AA..UAAUAUUGGAAUG UAUCU.UUGCCGCU.............UCGAUAG...........AAAAA.................CUAUCGG.....................................-UAC.AUAAU.AAUCAUU...GA-AA..UAAUAUUGGAAUG UAAAU.UUGCACCAcgua.........UUUU---...........AAA--.................---AAAA.....................................-UAC.AUAAC.AAUCAUU...UAAAG..CAAUAUUGGAAUG UAUAU.UUGCGCCUc............UGUUUAUa..........ACAGA................uAUAAAUU.....................................AUAC.AUAAU.AAUUAUU...UAAAA..CAAUGUUUGAAUG UAUAU.UUGCCCCUc............UGUUUAUg..........ACAGA................uAUAAUUU.....................................AUAC.AUAAU.AAUUAUU...UAAAA..AAAUGUUUGCAUG UAUAU.UUGCCCCUc............UGUUUAUa..........ACAGA................uGUAAUUU.....................................GUAC.AUAAU.AAUUAUU...UA-AA..AAAUGUUUGCAUG UAUAU.UUGCGCCUc............UGUUUAUa..........ACAGA................uGUAUUUG.....................................-UAC.AUAAU.AAUUAUU...UAAAA..CAAUGUUUGCAUG UAUAU.UUGCGCCUc............UGUAUAUa..........ACAGA................uAAAUUUG.....................................-UAC.AUAAU.AAUUAUU...UAAAA..CAAUGUUUGCAUG UAUAU.UUGCAACU.............UC-----...........AAACA.................-----GG.....................................AUAC.AUAAA.AACUAUU...AAAAC..UAAUAUUGGCAUG