Rfam: Seed sequence alignment for RF03161

URS0001A23A8F_12908/1-68 unclassified sequences 0.0 URS0001A23417_12908/1-68 unclassified sequences 0.0 URS0001A245C7_12908/1-68 unclassified sequences 0.0 URS0001A232A7_12908/1-68 unclassified sequences 0.0 URS0001A2445E_12908/1-68 unclassified sequences 0.0 URS0001A23DD8_12908/1-68 unclassified sequences 0.0 URS0001A23ECC_12908/1-67 unclassified sequences 0.0 URS0001A2379F_12908/1-68 unclassified sequences 0.0 URS0001A238B1_12908/1-68 unclassified sequences 0.0 URS0001A2382C_12908/1-68 unclassified sequences 0.0 URS0001A24861_12908/1-68 unclassified sequences 0.0 URS0001A2455D_12908/1-68 unclassified sequences 0.0 URS0001A24A80_12908/1-68 unclassified sequences 0.0 URS0001A239A5_12908/1-68 unclassified sequences 0.0 URS0001A24914_12908/1-68 unclassified sequences 0.0 URS0001A241D8_12908/1-68 unclassified sequences 0.0 URS0001A2327A_12908/1-67 unclassified sequences 0.0 URS0001A24956_12908/1-67 unclassified sequences 0.0 URS0001A23DF9_12908/1-67 unclassified sequences 0.0 URS0001A24523_12908/1-68 unclassified sequences 0.0 URS0001A23BB0_12908/1-68 unclassified sequences 0.0 URS0001A23AF2_12908/1-54 unclassified sequences 0.0 URS0001A247FA_12908/1-54 unclassified sequences 0.0 URS0001A235B1_12908/1-54 unclassified sequences 0.0 URS0001A247BC_12908/1-54 unclassified sequences 0.0 URS0001A237F3_12908/1-69 unclassified sequences 0.0 URS0001A249A7_12908/1-65 unclassified sequences 0.0 URS0001A248B8_12908/1-70 unclassified sequences 0.0 URS0001A23CBD_12908/1-60 unclassified sequences 0.0 URS0001A23D8D_12908/1-62 unclassified sequences 0.0

UAUAU.UUGCUCCC.............UAUUUACg..........AUAAA................cGUA-UUC...................................aaUCGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCUCCC.............UGUUUACg..........AUAAA................cGUA-AUC...................................aaUCGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGUUCCC.............UGAUUACg..........AUAGA................cGUAGUCA....................................aUCGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGUACCC.............UGUUUACg..........AUAAA................cGUAUUCG....................................aUCGC.AUAAA.AAUUAUU...UA-AA..CAAUAUUGGAAUG UAUAU.UUGCUNCC.............UGUUUACg..........AUAAA................cGUAUUCA....................................aUCGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCUCCC.............UGUUUACg..........AUAAA................cGUAUUCA....................................aUCGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUCU.UUGCCAAC.............UAAUUACg..........AUAGA................cGUAGUUA.....................................ACGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UACCU.UUGCAAAC.............UAAUUACg..........AUAGA................cGUAGUUA....................................aCAGC.AUAAA.AAUUAUU...UA-AA..CAAUAUUGGAAUG UACCU.UUGCAAAC.............UAAUUACg..........AUAAC................cGUAGUUA....................................aCAGC.AUAAA.AAUUAUU...UA-AA..CAAUAUUGGAAUG UAUAU.UUGCAAAC.............UAAUUGCg..........AAAGA................cGUAGUUA....................................aCAGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCCCAC.............UAAUUACg..........AUAGA................cGUAGUUA....................................aUCGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCCACC.............UAAUUACg..........AUAGA................cGUAGUUA....................................aUCGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCAAAC.............UAAUUACg..........AUAGA................cGUAGUUA....................................aCAGC.AUAAA.AAUUAUU...UA-AA..CAAUAUUGGAAUG UAUAU.UUGCAAAC.............UAAUUACg..........AUAGA................cGUAGUUA....................................aCAGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCCCAC.............UAAUUACg..........AUAGA................cGUAGUUA....................................aCAGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCCAAC.............UAAUUACg..........AUAGA................cGUAGUUA....................................aCAGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCGACU.............UAAUUACg..........AUAGA................cGUAGUUA.....................................ACGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCAACU.............UAAUUACg..........AUAGA................cGUAGUUA.....................................ACGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCUACU.............UGAUUACg..........AUAGA................cGUAGUUA.....................................GCGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGACACU.............UGAUUACg..........AUAGA................cGUAAUUA....................................uUCGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCCACU.............UGAUUACg..........AUAGA................cGUAAUUA....................................uUCGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUCU.UUGCCCAU.............C------...........AUUU-.................------G....................................uGUAC.AUAAU.AAUCAUU...UAAAU..AAAUAUUGGCAUG UAUAU.UUGCAGAA.............UU-----...........CAAAUu................-----AA.....................................-UAC.AUAAU.AAUUAU-...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCAGAA.............UU-----...........CAAAUu................-----AA.....................................-UAC.AUAAU.AAUUAU-...UA-AA..UAAUAUUGGCAUG UAUAU.UUGCAACU.............UU-----...........CAGAA.................-----AA.....................................GUAC.AUAAA.AAUUAU-...UA-AA..AAAUAUUGGCAUG UAUAU.UUGCCGUU.............CAAUUCU...........UAUAAgc...............AGAAUUG....................................uUUAC.AUAAA.AAUUAUU...UAAAC..AAAUAUUGGAAUG UAUAU.UUGCAC--.............GCAUUUU...........AGAAA.................AAAAUGC...................................auUUAC.AUAAU.AAUCAUU...UA-AA..UAAUAUUGGCAUG UAAUU.UUGCGCCG.............UCGAAUCuaaa.......AAG--.............uuugGAG-CGA.....................................CUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGCAUG UACAU.UUGUCGAUcg...........UUUG---...........AAAA-.................---CGAA.....................................UUAC.AUAAU.AAUCAUU...UA-AA..UAAUAUUUGCAUG UAAAU.UUGCGCCU.............CGGUAAA...........UAA--.................UUUACCA.....................................-UAC.AUAAU.AAUCAUU...UA-AA..UAAUAUUAGCAUG