Rfam: Seed sequence alignment for RF03161

URS0001A24865_1517683/1-46 Chryseobacterium sp. P1-3 0.0 URS0001A24865_1500290/1-46 Chryseobacterium sp. YR460 0.0 URS0001A24865_878220/1-46 Chryseobacterium sp. StRB126 0.0 URS0001A24865_1324352/1-46 Chryseobacterium gallinarum 0.0 URS0001A24865_307480/1-46 Chryseobacterium vrystaatense 0.0 URS0001A24865_1500282/1-46 Chryseobacterium sp. CF365 0.0 URS0001A23731_12908/1-55 unclassified sequences 0.0 URS0001A2359B_12908/1-56 unclassified sequences 0.0 URS0001A24996_12908/1-49 unclassified sequences 0.0 URS0001A23DA3_12908/1-67 unclassified sequences 0.0 URS0001A240F7_12908/1-48 unclassified sequences 0.0 URS0001A246E2_12908/1-48 unclassified sequences 0.0 URS0001A23CBC_12908/1-48 unclassified sequences 0.0 URS0001A23C34_12908/1-47 unclassified sequences 0.0 URS0001A23C34_693978/1-47 Riemerella anatipestifer DSM 15868 0.0 URS0001A23F47_28188/1-56 Capnocytophaga canimorsus 0.0 URS0001A23921_28188/1-55 Capnocytophaga canimorsus 0.0 URS0001A23B87_12908/1-47 unclassified sequences 0.0 URS0001A23E8E_12908/1-86 unclassified sequences 0.0 URS0001A246DF_886377/1-86 Muricauda ruestringensis DSM 13258 0.0 URS0001A24990_12908/1-63 unclassified sequences 0.0 URS0001A234FC_12908/1-63 unclassified sequences 0.0 URS0001A23ABC_12908/1-63 unclassified sequences 0.0 URS0001A232F0_12908/1-63 unclassified sequences 0.0 URS0001A23987_1250232/1-64 Muricauda sp. MAR_2010_75 0.0 URS0001A234E1_1348584/1-63 Cellulophaga baltica 18 0.0 URS0001A234E1_1495334/1-63 Cellulophaga sp. E6(2014) 0.0 URS0001A234E1_1348585/1-63 Cellulophaga baltica NN016038 0.0 URS0001A24A49_12908/1-65 unclassified sequences 0.0 URS0001A2472A_12908/1-65 unclassified sequences 0.0

UAAUU.UUGCACCCgu...........-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAU-...UA-AA..CAAUAUUGGAAUG UAAUU.UUGCACCCgu...........-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAU-...UA-AA..CAAUAUUGGAAUG UAAUU.UUGCACCCgu...........-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAU-...UA-AA..CAAUAUUGGAAUG UAAUU.UUGCACCCgu...........-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAU-...UA-AA..CAAUAUUGGAAUG UAAUU.UUGCACCCgu...........-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAU-...UA-AA..CAAUAUUGGAAUG UAAUU.UUGCACCCgu...........-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAU-...UA-AA..CAAUAUUGGAAUG UACCU.UUGCCCCGauuuaaaaaa...-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAUU...UA-AA..CAAUAUUGGAAUG UACCU.UUGCCCCGauuuaaaaaa...-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAUU...UUAAA..CAAUAUUGGAAUG UAUCU.UUGCACCCgaau.........-------...........-----.................-------.....................................-UAC.AUAAU.AAUUAUU...AA-AA..CAAUAUUGGAAUG UACAU.UUGCACCC.............GAAUAGAga.........AAA--...............ucUUUAUUC.....................................AUAC.AUAAU.AAUCAUU...UA-AA..UAAUAUUGGAAUG UACAU.UUGCACCCuca..........-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAUU...UA-AA..UAAUAUUGGAAUG UACAU.UUGCAGUCuca..........-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAUU...UA-AA..UAAUAUUGGAAUG UACAU.UUGCAGCCuca..........-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAUU...UA-AA..UAAUAUUGGAAUG UAAAU.UUGCAGCCuca..........-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAU-...UA-AA..UAAUAUUGGAAUG UAAAU.UUGCAGCCuca..........-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAU-...UA-AA..UAAUAUUGGAAUG UACAU.UUGCAACCgcauaucauag..-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAUU...AA-AA..UAAUAUUGGAAUG UACAU.UUGCAACCgcauaucauag..-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAU-...UA-AA..UAAUAUUGGAAUG UACAU.UUGCACCCgca..........-------...........-----.................-------.....................................-UAC.AUAAA.AAUCAU-...UA-AA..UAAUAUUGGCAUG UAUCU.UUGCACGC.............UGAUUG-cgcguccuucgAGAGA......cggaggaacugACAAUCA.....................................AUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGAAUG UAUCU.UUGCACGC.............UGAUUGCuuc..uccu..GAGCAugucga..aggaacuga-CAAUCA.....................................AUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGAAUG UAUCU.UUGCACGC.............UGAUUG-...........AAGGA.................-CAAUCA.....................................AUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGAAUG UAUCU.UUGCACGC.............UGAUUG-...........AAGGC.................-CAAUCA.....................................AUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGAAUG UAUCU.UUGCACGC.............UGAUUG-...........AAAGC.................-CAAUCA.....................................AUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGAAUG UAUCU.UUGCACGC.............UGAUUGA...........AGG--.................UCAAUCA.....................................AUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGAAUG UAUCU.UUGCGCGC.............UGAUUGA...........AGG--.................UCAAUCA.....................................AUAC.AUAAA.AAUCAUU...UAAAU..AAAUAUUGGAAUG UAUAU.UUGCACGC.............UGAUUGA...........AAA--.................UCAAUCA....................................uAUAC.AUAAA.AAUCAU-...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCACGC.............UGAUUGA...........AAA--.................UCAAUCA....................................uAUAC.AUAAA.AAUCAU-...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCACGC.............UGAUUGA...........AAA--.................UCAAUCA....................................uAUAC.AUAAA.AAUCAU-...UA-AA..UAAUAUUGGAAUG UAUCU.UUGCGCCC.............UGAUUGA...........GCG--.................UCAAUCG....................................gAUAC.AUAAA.AAUCAUU...UACAA..CAAUAUUGGCAUG UAUCU.UUGCGCCC.............UGAUUG-...........AAAAC.................-CAAUCA....................................cGUAC.AUAAA.AAUCAUU...UAAAA..UAAUAUUGGAAUG