Rfam: Seed sequence alignment for RF03161

URS0001A24A88_12908/1-88 unclassified sequences 0.0 URS0001A23260_12908/1-65 unclassified sequences 0.0 URS0001A233FF_12908/1-65 unclassified sequences 0.0 URS0001A248BE_12908/1-65 unclassified sequences 0.0 URS0001A23492_12908/1-65 unclassified sequences 0.0 URS0001A23881_1347342/1-65 Formosa agariphila KMM 3901 0.0 URS0001A233B9_12908/1-55 unclassified sequences 0.0 URS0001A23C50_12908/1-65 unclassified sequences 0.0 URS0001A246AD_12908/1-65 unclassified sequences 0.0 URS0001A23A4F_12908/1-66 unclassified sequences 0.0 URS0001A24571_12908/1-66 unclassified sequences 0.0 URS0001A234C4_12908/1-66 unclassified sequences 0.0 URS0001A234BC_12908/1-66 unclassified sequences 0.0 URS0001A24271_12908/1-65 unclassified sequences 0.0 URS0001A233B8_12908/1-65 unclassified sequences 0.0 URS0001A2385A_12908/1-66 unclassified sequences 0.0 URS0001A242B8_12908/1-66 unclassified sequences 0.0 URS0001A239FF_12908/1-65 unclassified sequences 0.0 URS0001A2425F_12908/1-46 unclassified sequences 0.0 URS0001A24324_12908/1-46 unclassified sequences 0.0 URS0001A2398B_12908/1-68 unclassified sequences 0.0 URS0001A23CE0_1286632/1-69 Zhouia amylolytica AD3 0.0 URS0001A23CA3_12908/1-68 unclassified sequences 0.0 URS0001A246FF_1086011/1-67 Flavobacterium frigoris PS1 0.0 URS0001A2329B_12908/1-67 unclassified sequences 0.0 URS0001A2483D_1131812/1-67 Flavobacterium sp. 83 0.0 URS0001A23A94_12908/1-67 unclassified sequences 0.0 URS0001A2382D_12908/1-67 unclassified sequences 0.0 URS0001A24A60_12908/1-67 unclassified sequences 0.0 URS0001A231F0_1423323/1-67 Flavobacterium sp. AED 0.0

UAUAU.UUGCAGCU.............UGAAAG-...........AAAAA.................-CUUUCAucacu....guccaa..cuguaa....uugggc...cAUAC.AUAAA.AAUCAUU...UAAAA..UAAUAUUGGAAUG UAUAU.UUGCAGCU.............UGAAAG-...........AAAAA.................-CUUUCA....................................uGUAC.AUAAA.AAUCAUU...UAAAA..UAAUAUUGGAAUG UAUAU.UUGCCGCC.............UGAAAGA...........AAA--.................UCUUUCA...................................gcGUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCCGCC.............UGAAAGA...........AAA--.................UCUUUCA...................................acAUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCCGCC.............UGAAAGA...........AAA--.................UCUUUCG...................................acAUAC.AUAAA.AAUGAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCCGCU.............UGGAAG-...........AAAAG.................-CUUCCA....................................uGUAC.AUAAA.AAUCAUU...UAAAU..AAAUAUUGGAAUG UAC--.--------.............UGAAAG-...........AAAAC.................-CUUUCA....................................uGUAC.AUAAA.AAUCAUU...UAAAU..AAAUAUUGGAAUG UAUAU.UUGCCGCU.............UGAAAG-...........AAAAC.................-CUUUCA....................................uGUAC.AUAAA.AAUCAUU...UAAAU..AAAUAUUGGAAUG UAUAU.UUGCCGCU.............UGAAAG-...........AAAAA.................-CUUUCA....................................uGUAC.AUAAA.AAUCAUU...UAAAU..AAAUAUUGGAAUG UAUAU.UUGCCGAU.............UGAAAGA...........AAA--.................UCUUUCA...................................uuGUAC.AUAAA.AAUCAUU...UAAAU..AAAUAUUGGAAUG UAUAU.UUGCCGAU.............UGAAAGA...........AAA--.................UCUUUCA...................................uaGUAC.AUAAA.AAUCAUU...UAAAU..AAAUAUUGGAAUG UAUAU.UUGCCGCU.............UGAAAGA...........AAA--.................UCUUUCA...................................uaGUAC.AUAAA.AAUCAUU...UAAAU..AAAUAUUGGAAUG UAUAU.UUGCCGCC.............UGAAAG-...........AAAAG.................-CUUUCA...................................guGUAC.AUAAC.AAUCAUU...UACAA..UAAUAUUAGAAUG UAUAU.UUGCCGCU.............CGAAAG-...........AAGAA.................-CUUUCG....................................uAUAC.AUAAA.AAUCAUU...UAAAA..UAAUAUUGGAAUG UAUAU.UUGCCGCU.............CGAAAG-...........AAGCA.................-CUUUCG....................................uAUAC.AUAAA.AAUCAUU...AAAAA..UAAUAUUCGAAUG UAUAU.UUGCCGAC.............CGAAAG-...........AAAAC.................-CUUUCG...................................guGUAC.AUAAA.AAUCAUU...UACAA..UAAUAUUAGCAUG UAUAU.UUGCCGAC.............UGAAAG-...........AAAUC.................-CUUUCG...................................guGUAC.AUAAA.AAUCAUU...UACAA..UAAUAUUAGCAUG UAUAU.UUGCCGAU.............CGAAAG-...........AAAAG.................-CUUUCG....................................uGUAC.AUAAA.AAUCAUU...UAAAU..AAAUAUUGGAAUG UACAU.UUGCCGCUg............-------...........-----.................-------.....................................-UAC.AUAAA.AAUCAUU...AA-AA..CAAUAUUGGAAUG UACAU.UUGCCGCCg............-------...........-----.................-------.....................................-UAC.AUAAA.AAUCAUU...AA-AA..CAAUAUUGGAAUG UACAU.UUGCCGCU.............C-GAUAAuc.........AAAA-...............ggUUAUCAA....................................cAUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCGGCC.............UGUAACAga.........AGG--...............ucUGUUAUG...................................ggGUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGAAUG UAUCU.UUGCACAC.............GAA-UUAgga........AAA--..............uccU-AUUUC.....................................AUAC.AUAAU.AAUCAUU...UAAAA..UAAUAUUGGAAUG UACUU.UUGCAGCC.............GUAUUACa..........AUAGC................uGUAAGAC.....................................AUAC.AUAAA.AAUCAUU...AA-AC..AAAUAUUGGAAUG UACUU.UUGCAGCC.............GUCUUACa..........AUAGC................uGUGAGAC.....................................AUAC.AUAAA.AAUCAUU...AA-AC..AAAUAUUGGAAUG UACUU.UUGCACCC.............GUCUUACa..........AUAGA................uGUAUGAC.....................................AUAC.AUAAA.AAUCAUU...AA-AC..AAAUAUUGGAAUG UACUU.UUGCACCC.............GUCUUACa..........AUGGA................uGUAUGAC.....................................AUAC.AUAAA.AAUCAUU...AA-AC..AAAUAUUGGAAUG UAUCU.UUGCACCC.............GUCUUACa..........AUAGA................uGUAUGAC.....................................AUAC.AUAAA.AAUCAUU...AA-AC..AAAUAUUGGAAUG UAUCU.UUGCACCC.............GUCUUACa..........AUAGC................uGUAGGAC.....................................AUAC.AUAAA.AAUCAUU...AA-AC..AAAUAUUGGAAUG UACUU.UUGCACCC.............GUCUUACa..........AUAGA................uGUACGGC.....................................AUAC.AUAAA.AAUCAUU...AA-AC..AAAUAUUGGAAUG