Rfam: Seed sequence alignment for RF03161

URS0001A240FB_12908/1-53 unclassified sequences 0.0 URS0001A23AE7_12908/1-54 unclassified sequences 0.0 URS0001A24AE6_12908/1-53 unclassified sequences 0.0 URS0001A232B4_1008457/1-66 Myroides sp. M09-0166 0.0 URS0001A23CCC_12908/1-61 unclassified sequences 0.0 URS0001A23DC9_12908/1-67 unclassified sequences 0.0 URS0001A2327E_12908/1-67 unclassified sequences 0.0 URS0001A23BA9_12908/1-63 unclassified sequences 0.0 URS0001A23CAD_906888/1-89 Persicivirga ulvanivorans 0.0 URS0001A23DFC_156586/1-89 Flavobacteria bacterium BBFL7 0.0 URS0001A236B2_906888/1-89 Persicivirga ulvanivorans 0.0 URS0001A241C0_12908/1-92 unclassified sequences 0.0 URS0001A2359D_12908/1-64 unclassified sequences 0.0 URS0001A23C8A_1121898/1-65 Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 0.0 URS0001A237CD_555500/1-67 Gillisia sp. ck-I2-15 0.0 URS0001A24150_12908/1-58 unclassified sequences 0.0 URS0001A237B9_12908/1-65 unclassified sequences 0.0 URS0001A243D2_12908/1-65 unclassified sequences 0.0 URS0001A24971_12908/1-66 unclassified sequences 0.0 URS0001A23E58_12908/1-69 unclassified sequences 0.0 URS0001A232B5_12908/1-59 unclassified sequences 0.0 URS0001A2449E_12908/1-59 unclassified sequences 0.0 URS0001A24485_12908/1-65 unclassified sequences 0.0 URS0001A23A3D_12908/1-59 unclassified sequences 0.0 URS0001A2451E_12908/1-66 unclassified sequences 0.0 URS0001A23AD1_12908/1-68 unclassified sequences 0.0 URS0001A246CE_12908/1-68 unclassified sequences 0.0 URS0001A2458C_12908/1-67 unclassified sequences 0.0 URS0001A24177_12908/1-68 unclassified sequences 0.0 URS0001A23D25_12908/1-68 unclassified sequences 0.0

UAUAU.UUGCGACUauaaaaa......-------...........-----.................-------.....................................-UGC.AUAAA.AAUUAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCAACUaucaaaaa.....-------...........-----.................-------.....................................-UAC.AUAAA.AAUUAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCGACUaucaaaa......-------...........-----.................-------.....................................-UAC.AUAAA.AAUUAUU...AAAAU..UAAUAUUGGCAUG UACCU.UUGCAUCG.............AAUUAUAg..........AAGUA................cUAUGAUU.....................................CUGC.AUAAA.AAUCAU-...UA-AA..UAAUAUUGGCAUG UACCU.UUGCGCACuu...........AAAU---...........UAAAAc................---GUUU.....................................-UAC.AUAAC.AAUCAUU...CA-AG..UAAUAUUGGCAUG UAUCU.UUGCCGCC.............UUGAU-C...........AUGAA.................GUAUCAA.....................................GUAC.AUAAA.AAUUAUU...AAAAAauUAAUGUUAGCAUG UAUCU.UUGCCGCC.............UUGAU-C...........AUGAA.................GCAUCAA.....................................GUAC.AUAAA.AAUUAUU...AAAAAauUAAUGUUAGCAUG UAAUU.UUGCAAGC.............UGAUAGA...........AAA--.................UCUAUCU.....................................GUAC.AUAAU.AAUCAUU...GA-AC..CAAUAUUGGCAUG UAUCU.UUGCAGC-.............CACUUUAaga........AGAAA..............ucuUAUCGUGaa.......gucag...aucau......cugac....GUAC.AUAAU.AUUCAUU..aUAAAA..UAAUUUUGGCAUG UAUCU.UUGCAGC-.............CACUUUAaga........AAAAG..............ucuUAUCGUGaa.......gucag...aucau......cugac....GUAC.AUAAU.AUUCAUU..aUAAAA..UAAUUUUGGCAUG UAUCU.UUGCAGC-.............CACUUUAaga........ACAAG..............ucuUAUCGUGaa.......gucag...aucau......cugac....GUAC.AUAAU.AUUCAUU..aUAAAA..UAAUUUUGGCAUG UAUCU.UUGCAGCC.............GCAUUAAaga........ACGAG..............ucuUUAAUGUgaa......gucag...aaaac......cugac....GUAC.AUAAU.AUUCAUUa.uCAAAA..UAAUUUUGGCAUG UAUAU.UUGCGCCU.............CCAAAG-...........CUUAAau...............-UUUUGG.....................................AUAC.AUAAA.AAUUAU-...UA-AU..AAAUAUUGGAAUG UAACU.UUGCACCCa............AAUUAGG...........AUAAA.................CCUAAUC.....................................-UAC.AUAAU.AAUUAUU...UA-AA..GAAUAUUAGCAUG UAUAU.UUGCGCCC.............UUGAUAG...........AUCGA.................CUAUCAA.....................................AUAC.AUAAG.AAUCAUU...UAAAA.gAAAUAUUGGCAUG UAUCU.UUGCCUUCaa...........UUA----...........GAG--.................----UAA....................................aCUAC.AUAAG.AAUCAUU...GA-AA..UAAUAUUGGCAUG UAUCU.UUGCCGCC.............UGAUUC-...........AAAGC.................-GGAUCA....................................gAUAC.AUAAU.AAUCAUU...UAAAG..CAAUAUUGGCAUG UAUCU.UUGCACGC.............UUAACGG...........AUAAA.................CCGUUAC.....................................AUAC.AUAAA.AAUCAUU...AA-AU..CAAUAUUGGCAUG UAUCU.UUGCAGCU.............GCAAAGCa..........AAA--................uGCUAUGC....................................aACAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGCAUG UAUAU.UUGGCGUCu............GAAUUGCg..........AUAAA................cGUAAUCA....................................aACGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUCU.UUGCCCCC.............GU-----...........AUAUAaaa..............-----AC....................................cAUAC.AUAAC.AAUCAUU...AA-AA..CAAUAUUGGCAUG UAUCU.UUGCCCCC.............G-U----...........AUAUAaac..............----AUC.....................................AUAC.AUAAC.AAUCAUU...AA-AA..CAAUAUUGGCAUG UAUAU.UUGCCGCU.............UGAUACG...........AAAGA.................CGUAUCG.....................................-UGC.AUAAA.AAUCAUU...UACAU..AAAUAUUGGAAUG UAUAU.UUGCCGAC.............GUUAAG-...........AAAUA.................-C----U.....................................-UAC.AUAAA.AAUCAUU...AAAUU..UAAUAUUGGCAUG UACUU.UUGCAACC.............GAA--CCuga........AAA--..............ucaGGAAUUC.....................................AUAC.AUAAA.AAUCAU-...UA-AU..AAAUAUUGGAAUG UAUAU.UUGCCCCC.............UUAUUACg..........AUAUC................cGUAAUUC....................................aACGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCCAAC.............UGGUUACg..........AACGA................cGUA-AUC...................................aaUCGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGUAGAC.............UGAUUACg..........AUAGA................cGUAGUUA.....................................ACGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCCAAC.............UAAUUACg..........AACGA................cGUAAUAA....................................aUCGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG UAUAU.UUGCCAAC.............UAAUUACg..........AACAA................cGUAAUAA....................................aUCGC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGAAUG