Rfam: Seed sequence alignment for RF03161

URS0001A233D4_12908/1-61 unclassified sequences 0.0 URS0001A237CC_12908/1-61 unclassified sequences 0.0 URS0001A2335C_12908/1-61 unclassified sequences 0.0 URS0001A23D84_12908/1-61 unclassified sequences 0.0 URS0001A24AD4_12908/1-49 unclassified sequences 0.0 URS0001A23EE8_12908/1-49 unclassified sequences 0.0 URS0001A23A69_12908/1-49 unclassified sequences 0.0 URS0001A2480E_12908/1-49 unclassified sequences 0.0 URS0001A23FA2_12908/1-49 unclassified sequences 0.0 URS0001A23A79_12908/1-49 unclassified sequences 0.0 URS0001A236F5_12908/1-50 unclassified sequences 0.0 URS0001A23C91_12908/1-49 unclassified sequences 0.0 URS0001A23235_12908/1-49 unclassified sequences 0.0 URS0001A2402F_12908/1-55 unclassified sequences 0.0 URS0001A24733_12908/1-55 unclassified sequences 0.0 URS0001A248C8_12908/1-55 unclassified sequences 0.0 URS0001A24999_12908/1-55 unclassified sequences 0.0 URS0001A23264_12908/1-56 unclassified sequences 0.0 URS0001A2499E_12908/1-55 unclassified sequences 0.0 URS0001A23E7E_12908/1-56 unclassified sequences 0.0 URS0001A24007_12908/1-55 unclassified sequences 0.0 URS0001A23957_12908/1-68 unclassified sequences 0.0 URS0001A2478F_12908/1-68 unclassified sequences 0.0 URS0001A243EF_12908/1-50 unclassified sequences 0.0 URS0001A24576_1848903/1-56 Capnocytophaga canis 0.0 URS0001A23FBA_12908/1-51 unclassified sequences 0.0 URS0001A2475B_12908/1-64 unclassified sequences 0.0 URS0001A23B3C_12908/1-64 unclassified sequences 0.0 URS0001A24531_12908/1-54 unclassified sequences 0.0 URS0001A23824_12908/1-55 unclassified sequences 0.0

UAUAU.UUGCCCUU.............CGU----...........GAAAAa................----ACG...................................aaCUAC.AUAAU.AAUCAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCCGCU.............CGUUA--...........AAA--.................--UAACG....................................aAUAC.AUAAA.AAUCAUU...AAAAU..UAAUAUUGGCAUG UAUCU.UUGCCGCU.............CGUUA--...........AAA--.................--UAACG....................................aAUAC.AUAAA.AAUCAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCCGAU.............CGUUA--...........AUU--.................--UAACG....................................uAUAC.AUAAA.AAUCAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCGUUCauuu.........-------...........-----.................-------.....................................-UAC.AUAAA.AAUUAUU...UA-AA..AAAUAUUGGCAUG UAUAU.UUGCAGUCauuu.........-------...........-----.................-------.....................................-UAC.AUAAA.AAUAAUU...GA-AA..UAAUAUUGGCAUG UAUAU.UUGCACACauuu.........-------...........-----.................-------.....................................-UAC.AUAAA.AAUUAUU...UA-AA..CAAUAUUGGCAUG UAUAU.UUGCACUCguuu.........-------...........-----.................-------.....................................-UAC.AUAAA.AAUCAUU...GA-UA..UAAUAUUGGCAUG UAUAU.UUGCACUCauuu.........-------...........-----.................-------.....................................-UAC.AUAAA.AAUCAUU...GA-AA..UAAUAUUGGCAUG UAUAU.UUGCACACauuu.........-------...........-----.................-------.....................................-UAC.AUAAA.AAUUAUU...GA-AC..UAAUAUUGGCAUG UAUAU.UUGCAGACauuuu........-------...........-----.................-------.....................................-UAC.AUAAA.AAUUAUU...GA-AA..UAAUAUUGGCAUG UAUAU.UUGCACACauuu.........-------...........-----.................-------.....................................-UAC.AUAAA.AAUUAUU...GA-AA..UAAUAUUGGCAUG UAUAU.UUGCAC-Aaauuu........-------...........-----.................-------.....................................-UAC.AUAAA.AAUUAUU...UA-AA..CAAUAUUGGCAUG UAUAU.UUGCACCUuuauuuauca...-------...........-----.................-------.....................................-UAC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGCAUG UAUAU.UUGCAGCUuuauuuauca...-------...........-----.................-------.....................................-UAC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGCAUG UAUAU.UUGCAGCUuuauuuauua...-------...........-----.................-------.....................................-UAC.AUAAA.AAUUAUU...UA-AU..UAAUAUUGGCAUG UAUAU.UUGCAGCUuuauuuauua...-------...........-----.................-------.....................................-UAC.AUAAA.AAUUAUU...UA-AA..UAAUAUUGGCAUG UAUAU.UUGCACCUuaauuuacaa...-------...........-----.................-------.....................................-UAC.AUAAA.AAUUAUU...AAAAA..AAAUAUUUGCAUG UAUAU.UUGCAGCUucauuuacaa...-------...........-----.................-------.....................................-UAC.AUAAA.AAUUAUU...AA-AA..AAAUAUUGGCAUG UAUAU.UUGCACCUucauuuacaa...-------...........-----.................-------.....................................-UAC.AUAAA.AAUUAUU...AAAAA..AAAUAUUGGCAUG UAUAU.UUGCAGACucauucauaa...-------...........-----.................-------.....................................-UAC.AUAAA.AAUUAUU...AA-AA..AAAUAUUGGCAUG UAUCU.UUGCCGCCu............GAUUACC...........AAAGC.................GGUAAUU...................................cuAUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGCAUG UAUAU.UUGCACAU.............UCAAUAAu..........AAUGA................aUUAUUGA....................................uAUAC.AUAAU.AAUCAUU...UA-AA..UAAUAUUGGCAUG UAUCU.UUGCGCCCgaua.........-------...........-----.................-------.....................................-UAC.AUAAU.AUUCAUU...UAAAA..UAAUUUUGGCAUG UAUCU.UUGCCACCuaaaaaucag...-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAUU...UAAAA..CAAUAUUGGAAUG UAUCU.UUGCCGAC.............U------...........UAUA-.................------A.....................................-UAC.AUAAG.AAUCAUU...UC-AA..UAAUAUUGGCAUG UAUAU.UUGCACCC.............UGUUUG-...........AAAAC.................-CAAUCA....................................gAUAC.AUAAA.AAUCAUU...AA-AC..CAAUAUUGGCAUG UAUCU.UUGCGCCC.............UCAUUGA...........ACG--.................UCAAUGA....................................gAUAC.AUAAA.AAUCAUU...AA-UA..CAAUAUUGGAAUG UAUAU.UUGCGCCCgauuaaaau....-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAUU...AA-AC..UAAUAUUGGCAUG UAUAU.UUGCCGCG.............C------...........AAUAAaa...............------G.....................................CUAC.AUAAG.AAUCAUU...UU-AA..UAAUAUUGGCAUG