Rfam: Seed sequence alignment for RF03161

URS0001A233E5_12908/1-65 unclassified sequences 0.0 URS0001A24B2A_12908/1-65 unclassified sequences 0.0 URS0001A23640_12908/1-65 unclassified sequences 0.0 URS0001A24529_12908/1-65 unclassified sequences 0.0 URS0001A24278_12908/1-66 unclassified sequences 0.0 URS0001A239A2_12908/1-67 unclassified sequences 0.0 URS0001A2463A_12908/1-66 unclassified sequences 0.0 URS0001A23772_12908/1-58 unclassified sequences 0.0 URS0001A236C9_12908/1-59 unclassified sequences 0.0 URS0001A24759_12908/1-59 unclassified sequences 0.0 URS0001A24320_12908/1-59 unclassified sequences 0.0 URS0001A2402B_12908/1-59 unclassified sequences 0.0 URS0001A23546_12908/1-59 unclassified sequences 0.0 URS0001A249E2_12908/1-59 unclassified sequences 0.0 URS0001A23839_12908/1-59 unclassified sequences 0.0 URS0001A248D3_12908/1-61 unclassified sequences 0.0 URS0001A2499F_12908/1-61 unclassified sequences 0.0 URS0001A248D9_12908/1-61 unclassified sequences 0.0 URS0001A23E30_12908/1-62 unclassified sequences 0.0 URS0001A232FF_12908/1-61 unclassified sequences 0.0 URS0001A236DD_12908/1-57 unclassified sequences 0.0 URS0001A23B41_12908/1-58 unclassified sequences 0.0 URS0001A2441A_12908/1-58 unclassified sequences 0.0 URS0001A237DB_12908/1-58 unclassified sequences 0.0 URS0001A23205_12908/1-58 unclassified sequences 0.0 URS0001A249D7_12908/1-49 unclassified sequences 0.0 URS0001A2358D_12908/1-54 unclassified sequences 0.0 URS0001A23253_12908/1-60 unclassified sequences 0.0 URS0001A24874_487796/1-62 Flavobacteria bacterium MS024-2A 0.0 URS0001A24874_12908/1-62 unclassified sequences 0.0

UAUAU.UUGCGCCU.............CCAAUA-...........AAUUAa................-UAUUGG.....................................UUAC.AUAAG.AAUUAUU...UACAA..AAAUAUUGGCAUG UAUAU.UUGCCGCU.............CCAAUA-...........AAUUAa................-UAUUGG.....................................UUAC.AUAAU.AAUUAUU...UACAA..UAAUAUUGGCAUG UAUAU.UUGCCGCU.............CCAAUA-...........AAUUAa................-UAUUGG.....................................UUAC.AUAAU.AAUUAUU...UAUAA..CAAUAUUGGCAUG UAUAU.UUGCCGCU.............CCAAUA-...........AAUUAa................-UAUUGG.....................................UUAC.AUAAU.AAUUAUU...UAUAA..UAAUAUUGGCAUG UAUAU.UUGCGCGU.............CCAAUAUa..........AAUU-................uAUAUUGG.....................................UUAC.AUAAA.AAUUAUU...UA-CA..AAAUAUUGGCAUG UACUU.UUGCGCCU.............CGAUUACca.........AAG--...............ugGUAGUCU.....................................GUAC.AUAAA.AAUCAUU...UA-AA..UAAUAUUGGAAUG UACUU.UUGCGCCU.............CGAUUACca.........GAG--...............ugGUAGUCA.....................................-UAC.AUAAU.AAUUAUU...UA-AG..UAAUAUUGGAAUG UAAAU.UUGCACCC.............GUC----...........CAAAGa................----GAC.....................................-UAC.AUAAU.AAUUAUU...UACAA..UAAUAUUGGCAUG UAAAU.UUGCACCC.............GUUCA--...........CAG--.................--UGAAC.....................................-UAC.AUAAG.AAUUAUU...UACAA..AAAUAUUGGCAUG UAAAU.UUGCACCC.............GUUCA--...........UAG--.................--UGAAC.....................................-UAC.AUAAG.AAUUAUU...UACAA..AAAUAUUGGCAUG UAAAU.UUGCACCC.............GUCCA--...........AAG--.................--UGGAC.....................................-UAC.AUAAU.AAUUAUU...UACAA..AAAUAUUGGCAUG UAAAU.UUGCACCC.............GUCC---...........AAAGA.................---GGGC.....................................-UAC.AUAAU.AAUCAUU...UACAA..UAAUAUUGGCAUG UAAAU.UUGCACCC.............GUCC---...........AAAGC.................---GGGC.....................................-UAC.AUAAU.AAUCAUU...UACAA..UAAUAUUGGCAUG UAAAU.UUGCACCC.............GUCC---...........AAAGA.................---GGAC.....................................-UAC.AUAAU.AAUUAUU...UACAA..AAAUAUUGGCAUG UAAAU.UUGCACCC.............GUCC---...........AAAGA.................---GGGC.....................................-UAC.AUAAU.AAUUAUU...UACAA..AAAUAUUGGCAUG UAUAU.UUGCCGAUc............GUU----...........AAUUA.................----AGC...................................uuAUAC.AUAAA.AAUCAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCCGAUc............GUU----...........AAUUA.................----AAC...................................uuAUAC.AUAAA.AAUCAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCCGAUc............GUU----...........AAUAA.................----AGC...................................uuAUAC.AUAAA.AAUCAUU...AAAAU..UAAUAUUUGCAUG UAUAU.UUGCCGAUc............GUU----...........AAUAUa................----AGC...................................uuAUAC.AUAAA.AAUCAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCCGAUc............CUU----...........AAUU-.................----AAG..................................cuuAUAC.AUAAA.AAUCAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCAGCUc............GU-----...........AAAAA.................-----AU.....................................UUAC.AUAAA.AAUCAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCAGCUc............GUU----...........UAAA-.................----AAU.....................................UUAC.AUAAA.AAUCAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCAGCUc............GUU----...........AAAA-.................----AAU.....................................UUAC.AUAAA.AAUCAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCGGCUc............GU-----...........AAAAAaa...............-----AC.....................................-UAC.AUAAA.AAUCAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCGGCUc............GU-----...........AAAAAaa...............-----AC.....................................-UAC.AUAAA.AAUCAUU...AAAAC..UAAUAUUGGCAUG UAUAU.UUGCCGCUcaa..........-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCGGUUcaaaauca.....-------...........-----.................-------.....................................-UAC.AUAAU.AAUCAUU...AAAAA..UAAUAUUGGAAUG UAUAU.UUGCCCUU.............CGUU---...........AAA--.................---AACG...................................aaCUAC.AUAAU.AAUAAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCCGUU.............CGUU---...........AAAAA.................---AACG...................................aaUUAC.AUAAU.AAUCAUU...AAAAU..UAAUAUUGGCAUG UAUAU.UUGCCGUU.............CGUU---...........AAAAA.................---AACG...................................aaUUAC.AUAAU.AAUCAUU...AAAAU..UAAUAUUGGCAUG