Rfam: Seed sequence alignment for RF03157

URS0001A23FDD_729/1-51 Haemophilus parainfluenzae 0.0 URS0001A23E16_729/1-51 Haemophilus parainfluenzae 0.0 URS0001A24089_758/1-51 Pasteurella pneumotropica 0.0 URS0001A24A70_12908/1-51 unclassified sequences 0.0 URS0001A24A5F_12908/1-51 unclassified sequences 0.0 URS0001A2492B_12908/1-51 unclassified sequences 0.0 URS0001A243FF_12908/1-51 unclassified sequences 0.0 URS0001A24327_726/1-51 Haemophilus haemolyticus 0.0 URS0001A23CF2_12908/1-51 unclassified sequences 0.0 URS0001A2362D_12908/1-51 unclassified sequences 0.0 URS0001A2362D_726/1-51 Haemophilus haemolyticus 0.0 URS0001A24A8A_726/1-51 Haemophilus haemolyticus 0.0 URS0001A235DD_726/1-51 Haemophilus haemolyticus 0.0 URS0001A23257_12908/1-51 unclassified sequences 0.0 URS0001A2331B_1028806/1-51 Haemophilus haemolyticus M21639 0.0 URS0001A23CF2_374933/1-51 Haemophilus influenzae PittII 0.0 URS0001A2335F_728/1-51 Avibacterium paragallinarum 0.0 URS0001A24A9C_908285/1-51 Necropsobacter rosorum 0.0 URS0001A24A9C_1461579/1-51 Haemophilus massiliensis 0.0 URS0001A24A9C_1400001/1-51 Necropsobacter massiliensis 0.0 URS0001A2447F_374933/1-51 Haemophilus influenzae PittII 0.0 URS0001A231E6_12908/1-50 unclassified sequences 0.0 URS0001A2321C_67855/1-56 Actinobacillus muris 0.0 URS0001A2345E_505317/1-50 Chelonobacter oris 0.0 URS0001A24081_1111728/1-51 Budvicia aquatica DSM 5075 = ATCC 35567 0.0 URS0001A23710_82985/1-50 Pragia fontium 0.0 URS0001A247B5_12908/1-61 unclassified sequences 0.0 URS0001A248F2_12908/1-61 unclassified sequences 0.0 URS0001A24018_12908/1-64 unclassified sequences 0.0 URS0001A23728_137584/1-50 Thalassomonas viridans 0.0

CACGCGGUGUAAGUG-...................GAAAG..............................-.CAUUU.AUUGCGGCGUGGCUUCAAUUU....GAGGU CACGCGGUGUAAGUG-...................GAAAG..............................-.CAUUU.AUAGCGGCGUGGCUUCAAUUU....GAGGU CACGCGGUGUGAGAA-...................GAGAG..............................-.UUCUU.AUAGCGGCGUGGCUUCAUUUU....GAGGU CACGCGGUGUAGGAA-...................GAAAG..............................-.UUCUU.AUAGCGGCGUGGCUUCAUUUU....GAGGU CACGCGGUGUAGGGA-...................GAAAG..............................-.UUCUU.AUAGCGGCGUGGCUUCGUUUU....GAGGU CACGCGGUGUAGGGA-...................GAAAG..............................-.UUCUU.AUAGCGGCGUGGCUUCAUUUU....GAGGU CACGCGGUGUAAGGA-...................GAAAG..............................-.UUCUU.AUAGCGGCGUGGCUUCAUUUU....GAGGU CACGCGGUGUGAGGA-...................GAAAG..............................-.UUCUU.AUAGCGGCGUGGCUUCAUUUU....GAGGU CACGCGGUGUAGGGA-...................GAAAG..............................-.UUCCU.AUAGCGGCGUGGCUUCAUUUU....GAGGU CACGCGGUGUGGGGA-...................GAAAG..............................-.UUCCU.AUAGCGGCGUGGCUUCAUUUU....GAGGU CACGCGGUGUGGGGA-...................GAAAG..............................-.UUCCU.AUAGCGGCGUGGCUUCAUUUU....GAGGU CACGCGGUGUGGGGA-...................GAAAG..............................-.UUCUC.AUAGCGGCGUGGCUUCAUUUU....GAGGU CACGCGGUGUGGGGA-...................GAAAG..............................-.UUCUU.AUGGCGGCGUGGCUUCAUUUU....GAGGU CACGCGGUGUGGGGA-...................GAAAG..............................-.UUCUU.AUAGCGGCGUGGCUUCAUUUU....GAGGU CACGCGGUGUGGGAA-...................GAAAG..............................-.UUCUU.AUAGCGGCGUGGCUUCAUUUU....GAGGU CACGCGGUGUAGGGA-...................GAAAG..............................-.UUCCU.AUAGCGGCGUGGCUUCAUUUU....GAGGU CACUCGGUG-CUAAA-...................UUCAGu.............................-.UUUAG.AGAGCGGAGUGGCUUCAAAUU....GAGGU CACUCGGUG-CCGAA-...................UUCAGu.............................-.UUCGG.AAAGCGGAGUGGCUUCAGAUU....GAGGU CACUCGGUG-CCGAA-...................UUCAGu.............................-.UUCGG.AAAGCGGAGUGGCUUCAGAUU....GAGGU CACUCGGUG-CCGAA-...................UUCAGu.............................-.UUCGG.AAAGCGGAGUGGCUUCAGAUU....GAGGU CGCGAGGCGUCAG---...................UCCUUgaac..........................-.--UUG.AUAGCGGCGUGGCUUUAAAUU....GAGGU CGUGUGGUAUCAGG-U...................GAAAA..............................A.UCCUG.AUGGCGACGCGGCCCAAGA--....GAGGU CAUAUGGUGUCAGA-C......a............AAAUAga.......................u....G.CUCUG.AUGGCGAUAUGGCUUCUAAAU....GAGGU CAUAUGGUGUCGGA--...................CUGGUu.............................-.-UCCG.AUAGCGAUAUGGCUUCAAUCC....GAGGU CGCGUGGUGUUCGG-C...................AAUAGu.............................G.ACCGG.AUAGCGACGCGGCUUAAGA--....GAGGC CGCGUGGUGUUCGG-C...................AAUAGu.............................G.ACCGU.AUAGCGACGCGACAUAGA---....GAGGC CGUAUGGUGCUUAG-C......aauu.........AAUAGg.....................aauu....G.ACUAA.GUGGCGAUACGGCCUAAUACA....GAGGU CGUAUGGUGCUUUG-C......agc..........AAUAAaua....................gcu....G.ACUAA.GUGGCGAUGCGGCCUUAAACA....GAGGU CGUAUGGUGUUAAG-C......gguug........CAAAGu....................caauc....GgGCUUA.AUAGCGAUACGGCUUCUUAAU....GAGGU CGUAUGGUACCUGG-C...................AAAA-..............................G.AUCAG.GUGGCGAUACGGCCUUAACA-....GAGGU