Rfam: Seed sequence alignment for RF03157

URS0001A23626_1202962/1-50 Moritella marina ATCC 15381 0.0 URS0001A23507_12908/1-63 unclassified sequences 0.0 URS0001A24908_12908/1-63 unclassified sequences 0.0 URS0001A23D22_12908/1-63 unclassified sequences 0.0 URS0001A23D22_1321772/1-63 Aggregatibacter sp. oral taxon 458 str. W10330 0.0 URS0001A24620_12908/1-63 unclassified sequences 0.0 URS0001A245C0_12908/1-63 unclassified sequences 0.0 URS0001A24B19_12908/1-63 unclassified sequences 0.0 URS0001A23BDF_12908/1-63 unclassified sequences 0.0 URS0001A2439B_12908/1-63 unclassified sequences 0.0 URS0001A23624_12908/1-63 unclassified sequences 0.0 URS0001A23CDC_1089447/1-63 Aggregatibacter actinomycetemcomitans RhAA1 0.0 URS0001A23CDC_907488/1-63 Aggregatibacter actinomycetemcomitans serotype e str. SC1083 0.0 URS0001A23CDC_12908/1-63 unclassified sequences 0.0 URS0001A23CDC_1167008/1-63 Aggregatibacter actinomycetemcomitans serotype b str. S23A 0.0 URS0001A23CDC_907487/1-63 Aggregatibacter actinomycetemcomitans serotype d str. I63B 0.0 URS0001A23CDC_754507/1-63 Aggregatibacter actinomycetemcomitans ANH9381 0.0 URS0001A244B3_1167010/1-63 Aggregatibacter actinomycetemcomitans serotype c str. AAS4A 0.0 URS0001A23608_12908/1-63 unclassified sequences 0.0 URS0001A240A2_667128/1-50 Pasteurella dagmatis ATCC 43325 0.0 URS0001A24AF6_1304873/1-51 Pasteurella multocida subsp. multocida OH4807 0.0 URS0001A238E4_1298929/1-54 Pasteurella multocida 1500C 0.0 URS0001A246C1_1304890/1-51 Pasteurella multocida OH1905 0.0 URS0001A24337_1169410/1-51 Pasteurella multocida subsp. gallicida X73 0.0 URS0001A2387D_1298924/1-51 Pasteurella multocida 1500E 0.0 URS0001A2387D_1290393/1-51 Pasteurella multocida 671/90 0.0 URS0001A23317_1604354/1-62 Mannheimia massilioguelmaensis 0.0 URS0001A232D6_221988/1-61 Mannheimia succiniciproducens MBEL55E 0.0 URS0001A23E16_12908/1-51 unclassified sequences 0.0 URS0001A23BDA_12908/1-51 unclassified sequences 0.0

UAUGUGGUGUCUGG-C...................AGU--..............................GuUUCAG.AUGGCGACAUAACCUAAAUU-....GAGGU CAUGCGGUGUCAGG--......gauugc.......UUUC-....................gcaauu....G.GCUUG.AUAGCGGCAUGGCUUCAAAUUu...GAGGU CAUGCGGUGUCAGG--......gauugc.......UUUU-....................gcgauu....G.GCUUG.AUAGCGGCAUGGCUUCAACUUu...GAGGU CAUGCGGUGUCAGG--......gauugc.......GUUU-....................gcgauu....G.GCUUG.AUAGCGGCAUGGCUUCAACUUu...GAGGU CAUGCGGUGUCAGG--......gauugc.......GUUU-....................gcgauu....G.GCUUG.AUAGCGGCAUGGCUUCAACUUu...GAGGU CAUGCGGUGUCAGG--......gauugc.......GUUU-....................gcgauu....G.GCUUG.AUAGCGGCAUGGCUUCAAAUUu...GAGGU CAUGCGGUGUCAGG--......gauugc.......UUCU-....................gcaauu....G.GCUUG.AUAGCGGCAUGGCUUCAAAUUu...GAGGU CAUGCGGUGUCAGG--......gauugc.......UUCU-....................gcaauu....G.GCUUG.AUAGCGGCAUGGCUUCCAAUUu...GAGGU CAUGCGGUGUCAAG--......gauugc.......UUCU-....................gcgauu....G.GCUUG.AUAGCGGUAUGGCUUCAAAUUu...GAGGU CAUGCGGUGUCAAG--......gauugc.......UUCU-....................gcgauu....G.GCUUG.AUAGCGGCAUGGCUUCAAAUUu...GAGGU CAUGCGGUGUCAGG--......gauugc.......UUCG-....................gcgauu....G.GCUUG.AUAGCGGCAUGGCUUCAAAUUu...GAGGU CAUGCGGUGUCAGG--......gauugc.......UUCU-....................gcgauu....G.GCUUG.AUAGCGGCAUGGCUUCAAAUUu...GAGGU CAUGCGGUGUCAGG--......gauugc.......UUCU-....................gcgauu....G.GCUUG.AUAGCGGCAUGGCUUCAAAUUu...GAGGU CAUGCGGUGUCAGG--......gauugc.......UUCU-....................gcgauu....G.GCUUG.AUAGCGGCAUGGCUUCAAAUUu...GAGGU CAUGCGGUGUCAGG--......gauugc.......UUCU-....................gcgauu....G.GCUUG.AUAGCGGCAUGGCUUCAAAUUu...GAGGU CAUGCGGUGUCAGG--......gauugc.......UUCU-....................gcgauu....G.GCUUG.AUAGCGGCAUGGCUUCAAAUUu...GAGGU CAUGCGGUGUCAGG--......gauugc.......UUCU-....................gcgauu....G.GCUUG.AUAGCGGCAUGGCUUCAAAUUu...GAGGU CGUGCGGUGUCAGG--......gauugc.......UUCU-....................gcgauu....G.GCUUG.AUAGCGGCAUGGCUUCAAAUUu...GAGGU CAUGCGGUGUCAGG--......gauugc.......UUUU-....................gcgauu....G.GCUUG.AUAGCGGCAUGGCUUCAAAUUu...GAGGU CACGCGGUGUCGG-U-...................UUUGA..............................-.GCUUG.AUAGCGGCGUGGCUUCAAUUU....GAGGU CACGCGGUGUC-AGUC...................UUU--..............................GaACUCG.AUAGCGGCGUGGCUUCAAAUC....GAGGU CAUGCGGUGUCAG---......ucu..........AAUA-.......................aga....-.ACUUG.AUAGCGGCAUGGCUUCAAAUU....GAGGU CAUGCGGUGUCAG-U-...................CUAAGu.............................-.ACUUG.AUAGCGGCAUGGCUUCAAAUU....GAGGU CAUGCGGUGUC-AGU-...................CUGUGu.............................-.ACUCG.AUAGCGGCAUGGCUUCAAAUU....GAGGU CACGCGGUGUCAG---......uc...........CUU--........................ga....-.ACUUG.AUAGCGGCGUGGCUUCAAAUC....GAGGU CACGCGGUGUCAG---......uc...........CUU--........................ga....-.ACUUG.AUAGCGGCGUGGCUUCAAAUC....GAGGU CUCGUGGUGUUUGGA-......aacuc........UUUA-.....................gaguug...G.UCCUU.AUAGCGGCGAGGCUUCAAUUU....GAGGU CUCGUGGUGUUUGGA-......agcuc........UCA--.....................gagcug...G.UCCUU.AUAGCGGCGAGGCUUCAUUUU....GAGGU CACGCGGUGUAAGUG-...................GAAAG..............................-.CAUUU.AUAGCGGCGUGGCUUCAAUUU....GAGGU CACGCGGUGUAAGUG-...................GAGAG..............................-.CAUUU.AUAGCGGCGUGGCUUCAAUUU....GAGGU