Rfam: Seed sequence alignment for RF03157

URS0001A239EB_186490/1-52 Candidatus Baumannia cicadellinicola 0.0 URS0001A2419B_715/1-69 Actinobacillus pleuropneumoniae 0.0 URS0001A24046_754260/1-69 Actinobacillus pleuropneumoniae serovar 11 str. 56153 0.0 URS0001A24046_754256/1-69 Actinobacillus pleuropneumoniae serovar 6 str. Femo 0.0 URS0001A24046_754262/1-69 Actinobacillus pleuropneumoniae serovar 13 str. N273 0.0 URS0001A24036_887324/1-69 Actinobacillus ureae ATCC 25976 0.0 URS0001A246C2_1120931/1-69 Actinobacillus capsulatus DSM 19761 0.0 URS0001A246C2_202947/1-69 Actinobacillus equuli subsp. equuli 0.0 URS0001A246C2_696748/1-69 Actinobacillus suis H91-0380 0.0 URS0001A232C2_1122190/1-65 Mannheimia granulomatis DSM 19156 0.0 URS0001A23BEF_85402/1-65 Mannheimia granulomatis 0.0 URS0001A249B7_591023/1-65 Actinobacillus minor 202 0.0 URS0001A23951_12908/1-76 unclassified sequences 0.0 URS0001A233DE_12908/1-64 unclassified sequences 0.0 URS0001A233DE_1035839/1-64 Haemophilus [parainfluenzae] CCUG 13788 0.0 URS0001A23961_637911/1-65 Actinobacillus minor NM305 0.0 URS0001A23BBF_1005999/1-53 Leminorella grimontii ATCC 33999 = DSM 5078 0.0 URS0001A24311_339671/1-59 Actinobacillus succinogenes 130Z 0.0 URS0001A242DC_12908/1-62 unclassified sequences 0.0 URS0001A23F7C_12908/1-49 unclassified sequences 0.0 URS0001A23DD6_12908/1-69 unclassified sequences 0.0 URS0001A238C3_12908/1-67 unclassified sequences 0.0 URS0001A249EE_12908/1-68 unclassified sequences 0.0 URS0001A239C4_12908/1-68 unclassified sequences 0.0 URS0001A245A0_1658765/1-68 Marinobacter subterrani 0.0 URS0001A2349F_12908/1-68 unclassified sequences 0.0 URS0001A23898_12908/1-68 unclassified sequences 0.0 URS0001A23385_12908/1-68 unclassified sequences 0.0 URS0001A24B2E_1396859/1-68 Marinobacter sp. C1S70 0.0 URS0001A23B7F_1123493/1-80 Vibrio litoralis DSM 17657 0.0

CGUGUGGCU-------...................UAUAGuuaaaaucgucg..................-.-----.AUAGCGACACAAUCUGACGAA....UAGGU CAUAUGGUACUUAUC-agcggauauac........AAAU-.....................guauaacaa-.GGUAA.GUGGCGAUAUGGCUUCAUUA-....GAGGU CAUAUGGUACUUAUC-agcggauauac........GAAA-.....................guauaacaa-.GAUAA.GUGGCGAUAUGGCUUCAUUA-....GAGGU CAUAUGGUACUUAUC-agcggauauac........GAAA-.....................guauaacaa-.GAUAA.GUGGCGAUAUGGCUUCAUUA-....GAGGU CAUAUGGUACUUAUC-agcggauauac........GAAA-.....................guauaacaa-.GAUAA.GUGGCGAUAUGGCUUCAUUA-....GAGGU CAUAUGGUACUUAUC-agcggauauac........GUAU-.....................guauaacaa-.GAUAA.GUGGCGAUAUGGCUUCAUUA-....GAGGU CAUAUGGUACUUAUC-agcggauauac........GAAU-.....................guauaacaa-.GAUAA.GUGGCGAUAUGGCUUCAUUA-....GAGGU CAUAUGGUACUUAUC-agcggauauac........GAAU-.....................guauaacaa-.GAUAA.GUGGCGAUAUGGCUUCAUUA-....GAGGU CAUAUGGUACUUAUC-agcggauauac........GAAU-.....................guauaacaa-.GAUAA.GUGGCGAUAUGGCUUCAUUA-....GAGGU CAUAUGGUACCUAUU-.agcgguag..........AGAGU.......................cuaacaa-.GAUAG.GUGGCGAUAUGGCUUCUUAU-....GAGGU CAUAUGGUACCUAUC-.agcgguag..........AGAGU.......................cuaacaa-.GAUAG.GUGGCGAUAUGGCUUCUUAU-....GAGGU CAUAUGGUACUUAUC-.agcg.guu..........CGUGAuga....................aacaa..-.GAUAA.GCAGCGAUAUGGCUUCUUAU-....GAGGU CAUAUGGUACUUAUC-.agcgguucaau.......UGAAAuaaua...............guugaaacaa-.GAUAA.GCAGCGAUAUGGCUUCUUAU-....GAGGU CAUAUGGUACUUAUC-.agcgguuc..........UUUU-.......................gaaacaa-.GAUAA.GCAGCGAUAUGGCUUCUUAC-....GAGGU CAUAUGGUACUUAUC-.agcgguuc..........UUUU-.......................gaaacaa-.GAUAA.GCAGCGAUAUGGCUUCUUAC-....GAGGU CAUAUGGUACUUAUC-.agcgguuc..........AUCAU.......................gaaacaa-.GAUAA.GCAGCGAUAUGGCUUCUUAU-....GAGGU CGUAUGGUGUACGG--......ca...........AAUCGg.......................ug....-.ACCGU.AUAGCGAUACGACUUUAGA--....GAGGU CGUAUGGUGUAAGGU-......ggcu.........UGCG-......................ggcc....G.ACGUU.AUGGCGAUACGGCUUCUGACA....GAGGU AAUGCGGUGCCCGG-C......ag...........CGAUUcaauaa..................cu....G.AUCGG.GUGGCGGCAUUGCCUGAAAAU....GAGGU AAUGCGGUGCCCGG-C...................AGAA-..............................G.AUCGG.GUAGCGGCAUUGCCCUGGA--....GAGGU CGUGCGGUGCCUGG-C..accuggagc........GAUUUaa...................gcucccgu.G.AUCAG.GUAGCGGCACGACCCGACA--....GAGGU CAUGCGGUGCCUGG-C..gccuggua.........AUUCAga....................ugccccgcG.AUCAG.GUAGCGGCAUGACCUAAC---....GAGGU CGUGCGGUGCCUGG-C..gccugggua........AUCAAga...................ugccccgc.G.AUCAG.GUAGCGGCAUGACCUAAC---....GAGGU CAUGCGGUGCCUGG-C..gccugggua........AUCAAga...................uaccccgc.G.AUCAG.GUAGCGGCAUGACCUAAC---....GAGGU CAUGCGGUGCCUGG-C..gccagggua........GUUCAga...................ugccccgu.G.AUCAG.GUAGCGGCAUGACCUAAC---....GAGGU CAUGCGGUGCCUGG-C..accugggca........GCUAAga...................ugccccgu.G.AUCAG.GUAGCGGCAUGACCUAAC---....GAGGU CAUGCGGUGCCUGG-C..accugggca........GCAAAga...................ugccccgu.G.AUCAG.GUAGCGGCAUGACCUAAC---....GAGGU CAUGCGGUGCCUGG-C..accugggca........GCCAAaa...................ugccccgu.G.AUCAG.GUAGCGGCAUGACCUAAC---....GAGGU CAUGCGGUGCCUGG-C..accugggca........GCCAAaa...................ugccccgu.G.AUCAG.GUAGCGGCAUGACCUAAA---....GAGGU CGUAUGGUGUCUGACU......gcuuugauacuc.GCAA-.............gagauauuugaguaagaA.UUCAG.AUAGCGAUACGGACCAAUAA-....AAGGU