Rfam: Seed sequence alignment for RF00641

URS000075EB6F_10090/1-82 Mus musculus (house mouse) 0.0 URS000075B241_10116/1-82 Rattus norvegicus (Norway rat) 0.0 URS00007E4149_9615/1-56 Canis lupus familiaris (dog) 0.0 URS00007E36B8_246437/1-56 Tupaia chinensis (Chinese tree shrew) 0.0 URS000075D3D2_9796/1-70 Equus caballus (horse) 0.0 URS000075D1CB_9913/1-69 Bos taurus (cattle) 0.0 URS000075D1CB_9598/1-69 Pan troglodytes (chimpanzee) 0.0 URS000075D5A7_9606/1-70 Homo sapiens (human) 0.0 URS000075D5A7_9544/1-70 Macaca mulatta (Rhesus monkey) 0.0 URS000075D5A7_9600/1-70 Pongo pygmaeus (Bornean orangutan) 0.0 URS00000A37EE_9940/12-92 Ovis aries (sheep) 0.0 URS00000A37EE_9925/12-92 Capra hircus (goat) 0.0 URS0000D50E09_9823/35-115 Sus scrofa (pig) 0.0 URS000075A71B_10029/1-75 Cricetulus griseus (Chinese hamster) 0.0 URS000072E415_10090/1-79 Mus musculus (house mouse) 0.0 URS000070C2FE_10116/1-79 Rattus norvegicus (Norway rat) 0.0 URS00005F07CA_9940/13-95 Ovis aries (sheep) 0.0 URS00005F07CA_9925/13-95 Capra hircus (goat) 0.0 URS000075E325_9913/1-81 Bos taurus (cattle) 0.0 URS00007E4811_9796/29-111 Equus caballus (horse) 0.0 URS0000415F62_9940/32-112 Ovis aries (sheep) 0.0 URS00007E3D7D_9925/32-112 Capra hircus (goat) 0.0 URS000075C1C2_10029/1-75 Cricetulus griseus (Chinese hamster) 0.0 URS000075D9E1_10116/1-76 Rattus norvegicus (Norway rat) 0.0 URS000075E63F_10090/1-81 Mus musculus (house mouse) 0.0 URS000075E204_9796/1-74 Equus caballus (horse) 0.0 URS00007E40A1_9615/1-56 Canis lupus familiaris (dog) 0.0 URS000075E7F7_9593/21-102 Gorilla gorilla (western gorilla) 0.0 URS000075B7C7_9598/1-79 Pan troglodytes (chimpanzee) 0.0 URS0000717C38_9606/1-80 Homo sapiens (human) 0.0

TGGTACTTGGAG.AGTGGTTATCCCTGTCCTCTTCGCTTC.ACTCATG.CCGAATCGTACAGGGTCATCCACTT.TTTCAGTATCA TGGTACTTGGAG.AGTGGTTATCCCTGTCCTCTTCGCTTC.ACTTATG.CCGAATCGTACAGGGTCATCCACTT.TTTCAGTATCA ------------.--AGTTCGACCGTGTTATATTCGCTTT.ATTGACT.TCGAATAATACATGGTTGGTCTTT-.----------- ------------.--AGATCGACCGTGTTATATTCGCTTT.ATTGACT.TCGAATAATACATGGTTGATCTTT-.----------- ------TTGAAG.GGAGATCGACCGTGTCATATTCGCTTT.ATTGACT.TCGAATAATACATGGTTGATCTTTT.CTCG-G----- -------TGAAG.GGAGATCGACCGTGTTATATTCGCTTT.ATTGACT.TCGAATAATACATGGTTGATCTTTT.CTCA-G----- -------TGAAG.GGAGATCGACCGTGTTATATTCGCTTT.ATTGACT.TCGAATAATACATGGTTGATCTTTT.CTCA-G----- ------TTGAAG.GGAGATCGACCGTGTTATATTCGCTTT.ATTGACT.TCGAATAATACATGGTTGATCTTTT.CTCA-G----- ------TTGAAG.GGAGATCGACCGTGTTATATTCGCTTT.ATTGACT.TCGAATAATACATGGTTGATCTTTT.CTCA-G----- ------TTGAAG.GGAGATCGACCGTGTTATATTCGCTTT.ATTGACT.TCGAATAATACATGGTTGATCTTTT.CTCA-G----- TGGTACCTGAAG.GGAGATCGACCGTGTTATATTCGCTTT.ATTGACT.TCGAATAATACATGGTTGATCTTTT.CTCA-GTATCA TGGTACCTGAAG.GGAGATCGACCGTGTTATATTCGCTTT.ATTGACT.TCGAATAATACATGGTTGATCTTTT.CTCA-GTATCA TGGTACTTGAAG.GGAGATCGACCGTGTTATATTCGCTTG.GCTGACT.TCGAATAATACATGGTTGATCTTTT.CTCA-GTATCT -----CTTGAAG.GGAGATCGACCGTGTTATATTCGCTTG.GCTGACT.TCGAATAATACATGGTTGATCTTTT.CTCG-GTATC- -GGTACTTGAAG.GGAGATCGACCGTGTTATATTCGCTTG.GCTGACT.TCGAATAATACATGGTTGATCTTTT.CTCA-GTATC- -GGTACTTGAAG.GGAGATCGACCGTGTTATATTCGCTTA.GCTGACT.TCGAATAATACATGGTTGATCTTTT.CTCA-GTATC- TGGTACTTGAAG.AGAGGTCTTCCATGGTGCATTCGCTTT.ATTCTTTgACGAATCATACATGGTTGACCTTTT.TTTAGGTATCA TGGTACTTGAAG.AGAGGTCTTCCATGGTGCATTCGCTTT.ATTCTTTgACGAATCATACATGGTTGACCTTTT.TTTAGGTATCA --GTACTTGAAG.AGAGGTCTTCCATGGTGCATTCGCTTT.ATTCTTTgACGAATCATACATGGTTGACCTTTT.TTTAGGTATCA CGGTGCTTGAAG.AGAGGTCTTCCATGATGCATTCGCTTT.ATTTTTCgACGAATCATACATGGTTGACCTTTT.TTTAAGTATCA GGGTACTTGAGG.AGAGGTTGTCTGTGATGAGTTCGCTTT.ATTAATG.ACGAATATAACACAGATGGCCTGTT.-TTCAGTACCA GGGTACTTGAGG.AGAGGTTGTCTGTGATGAGTTCGCTTT.ATTAATG.ACGAATATAACACAGATGGCCTGTT.-TTCAGTACCA -----CTTGAGG.AGAGGTTGTCTGTGATGAGTTCGCTTT.ATTAATG.ACGAATATAACACAGATGGCCTGTT.-TTCAATACC- ----ACTTGAGG.AGAGGTTGTCTGTGATGAGTTCGCTTT.ATTAATG.ACGAATATAACACAGATGGCCTGTT.-TTCAATACC- GGGTACTTGAGG.AGAGGTTGTCTGTGATGAGTTCGCTTT.ATTAATG.ACGAATATAACACAGATGGCCTGTT.-TTCAATACCA -------TGAGG.AGAGGTTGTCTGTGATGAGTTCGCTTT.ATTAATG.ACGAATATAACACAGATGGCCTGTC.-TTCAGTACCA ------------.--AGGTTGTCTGTGATGAGTTCGCTTT.ATTAATG.CCGAATATAACACAGATGGCCTGT-.----------- GGGTACCTGAGA.AGAGGTTGTCTGTGATGAGTTCGCTTTtATTAATG.ACGAATATAACACAGATGGCCTGTT.-TTCAGTACCG --GTACCTGAGA.AGAGGTTGTCTGTGATGAGTTCGCTTTtATTAATG.ACGAATATAACACAGATGGCCTGTT.-TTCAGTACC- -GGTACCTGAGA.AGAGGTTGTCTGTGATGAGTTCGCTTTtATTAATG.ACGAATATAACACAGATGGCCTGTT.-TTCAGTACC-