# STOCKHOLM 1.0
#=GF ID BTnc049
#=GF AC RF04179
#=GF DE Bacteroides sRNA BTnc049
#=GF AU Westermann, A
#=GF GA 81.9
#=GF NC 81.6
#=GF TC 82.8
#=GF SE Published; PMID:PMC7366714;
#=GF SS Published; PMID:PMC7366714;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 32678091
#=GF RT A high-resolution transcriptome map identifies small RNA regulation of
#=GF RT metabolism in the gut microbe Bacteroides thetaiotaomicron.
#=GF RA Ryan D, Jenniches L, Reichardt S, Barquist L, Westermann AJ
#=GF RL Nat Commun. 2020;11:3557.
#=GF CC An uncharacterized small RNA discovered in Bacteroides thetaiotaomicron
#=GF CC [1]
#=GF WK Bacteroides_thetaiotaomicron_sRNA
#=GF SQ 9

AE015928.1/1515041-1515151 GAACAGAA-AGGGAUUGUGAAAUUCCA-AGAAUAGAAUAGUUUAGUUAAGUCUAGUUUAGUUUUUGUGUU--GAGUGCUUCCU-CGUCGGCGGACGAUCUAGGAAGCACUUUUUAU
AP006841.1/2195652-2195540 AAACAGAACGGAAGUUGUGAAACUUCCAAGAAUAGAAUAGUUUAGUUAAGUCUAGUUUAGUUUUUGUGUUG-AAGGGCUUCUA-CCUCAGAGGAGG-AUUUAGAAGCCCUUUCUAU
CP002352.1/3248976-3249084 GAACAGAU-AGGAGUUGUGAAACUCCG-CCAAUAGAAUAGUUUAGUUAAGUCUAGUUUAGUUUUUGUGU-G-AAGCACUUCCUUCGUAAGCGAACG--UU-GGAAGUGCUUUUAUU
CP007619.1/1692788-1692895 --ACAAG--GGAAGUUGUGAAACUUCU--UAAUAGAAUAGUUUAGUUAAGUCUAGUUUAGUUUUUGUGUUGUAAGUGCUCCCAUCGUAAGCGAACGAA--UGGGAGCACGUUUUUU
CP008741.1/3782293-3782400 --ACAAG--GGAAGUUGUGAAACUUCU--UAAUAGAAUAGUUUAGUUAAGUCUAGUUUAGUUUUUGUGUUGUAAGUGCUCCCAUCGUAAGCGAACGAA--UGGGAGCACGUUUUUU
CP011073.1/2033203-2033093 --ACAGAACGGAAGUUGUGAAACUUCCAAGAAUAGAAUAGUUUAGUUAAGUCUAGUUUAGUUUUUGUGUUG-AAGGGCUUCUA-CCUCAGAGGAGG-AUUUAGAAGCCCUUUCUAU
CR626927.1/2251906-2251794 AAACAGAACGGAAGUUGUGAAACUUCCAAGAAUAGAAUAGUUUAGUUAAGUCUAGUUUAGUUUUUGUGUUG-AAGGGCUUCUA-CCUCAGAGGAGG-AUUUAGAAGCCCUUUCUAU
FP929033.1/941975-942076   --ACAGAAAGGGA-UUGUGAAA-UUCCAAGAAUAGAAUAGUUUAGUUAAGUCUAGUUUAGUUUUUGUGUUG-AUCGGAAGC-C-UGCGAGCGAGCA---UGAGCUUCCGAUU----
FQ312004.1/2244340-2244230 --ACAGAACGGAAGUUGUGAAACUUCCAAGAAUAGAAUAGUUUAGUUAAGUCUAGUUUAGUUUUUGUGUUG-AAGGGCUUCUA-CCUCAGAGGAGG-AUUUAGAAGCCCUUUCUAU
#=GC SS_cons               ..(((((,,,<<<<<<____>>>>>>,,,,,,,,,,,,<<-<<<<______>>>>->>,,,,)))))::::.::<<<<<<<<<.<<<______>>>.--->>>>>>>>>:::::::
#=GC RF                    ..aCagaAcgGgaGuuGUGAaaCucCuAAgAAUAGAAUagUuuaGUUAAGUCuagUuuAGUUuuuGuGUUG.AAggGcucCcc.cguaAGcGaacg.auUggGgagCccuUUuuaU
#=GC cons                  --ACAGAn-RGRARUUGUGAAAYUYCn-nnAAUAGAAUAGUUUAGUUAAGUCUAGUUUAGUUUUUGUGUUG-AAGnGCUYCYn-CGUnAGCGRACG-nnUnRGRAGCnCnUUYnnU
//
