# STOCKHOLM 1.0
#=GF ID AaHKsRNA22
#=GF AC RF02902
#=GF DE Aggregatibacter sRNA 22
#=GF AU Argasinska J; 0000-0003-2678-2824
#=GF GA 39.8
#=GF NC 39.6
#=GF TC 40.0
#=GF SE Argasinska J
#=GF SS Predicted; RNAfold;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 29211829
#=GF RT Small RNA repertoires and their intraspecies variation in Aggregatibacter
#=GF RT actinomycetemcomitans.
#=GF RA Oogai Y, Gotoh Y, Ogura Y, Kawada-Matsuo M, Hayashi T, Komatsuzawa H
#=GF RL DNA Res. 2017 Dec 2. pii: 4675; [Epub ahead of print]
#=GF CC Validated by RT-PCR.
#=GF WK Aggregatibacter_actinomycetemcomitans
#=GF SQ 7

CP001733.2/805963-805862   GUGCGGGC-ACAAAAAACAACGUUUUUUGAACGUUGGCUCUGCCAGCGGCCCCAUAGGGGCGAAUAAAUCACUUUUUGUGAUUUAUGAGUAA----U-CAU-----UUACGAC
CP005383.1/107607-107707   UUUUAGCC-ACAAAAUGCAAUGCAUUUUGAACGUUGGCUUUGCCAACGGCUCCGUAGGAGCGAACAAAAUUAGAA-AUAAUUUUGUGAGUAA----U-AAU-----CGACCGC
CP013830.1/1340437-1340533 GUGCGGUC-ACAAAAAACAA-GUUUUUUGAACGUUGACUUUACCAAUGGCUCCAAAGGAGUGAAUCAAUCACUU-UAGUGAUUGAUGGAUAA----U-UUU-----UCAC---
CP000569.1/324335-324436   AAGCGGUUGACAAAACGCAAAGCGUUUUGAACGUUGGCUUUGCCAACGGCUCCGAAGGAGUGAGAAAUCUGUCA-CAACAGAUUUCGAAUAA----A-AAA-----CCAUUAA
CP000746.1/1758379-1758472 GUGCGGUC-ACAAAAAACAUCGCUUUUUGAACGUUGGCUUUGCCAACGGCCUU---UGGGGGAGCUAUCCUUA---AAAGGAUUGC--GAAU----A-AAA-----AUCCGAU
CP003745.1/853924-854022   AAGCAGAG-ACAAAACGCU-UGCGUUUUGAACGUUGGCUCCGCCAACGGCCCCAAAGGGGCGAGUGAACA-----A---UGUUCACGAGUAAAACC-G---ACCGCUUGCGAG
MLHJ01000002.1/8765-8861   GUGCGGUC-ACAAAAAACAACGUUUUUUGAACGUUGGCUCUGCCAACGGCUCCGAAGGAGUGAGUAAACCACGU-UAGUGAUUUACGAAUAA--------------UUUUGAC
#=GC SS_cons               ::::::::.:<<<<<<<<___>>>>>>>>::<<<<<<<___>>>>>>><<<<<___>>>>>::<<<<<<<<<__.__>>>>>>>>>::<<<<...._.___.....>>>>:::
#=GC RF                    guGCgGuc.ACaaaacgCAAuGcguuuuGAACGuUGGCUuUGCCAaCGgCcCcaaAgGgGcGAgcgaaccgcuu.uAgcgguucgcGAguag....u.aau.....cuacgAu
//
