# STOCKHOLM 1.0
#=GF ID Acido-1
#=GF AC RF01686
#=GF DE Acido-1 RNA
#=GF AU Weinberg Z; 0000-0002-6681-3624
#=GF GA 50.0
#=GF NC 39.4
#=GF TC 61.4
#=GF SE Published; PMID:20230605;
#=GF SS Published; PMID:20230605;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 28.80 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 20230605
#=GF RT Comparative genomics reveals 104 candidate structured RNAs from bacteria,
#=GF RT archaea and their metagenomes.
#=GF RA Weinberg Z, Wang JX, Bogue J, Yang J, Corbino K, Moy RH, Breaker RR
#=GF RL Genome Biol. 2010;11:R31.
#=GF WK Acido-1_RNA_motif
#=GF SQ 4

CP000473.1/3480719-3480784 AAUGGCCCCGAGC-UGGGUA---CUCGGGGCCUGCACUCAGAGGGU-GGCGGUGGGAGGGGACUCACCGCC
CP000473.1/3481695-3481760 AAUGGCCCCGAGC-UGGGUA---CUCGGGGCCUGCACUCAGAGGGU-GGCGGUGGGAGGGGACUCACCGCC
CP000360.1/235844-235785   GGAGCAGCGAA---GAA-------UUAGUUGCGAAACUGAUUGACU-GACGGCGGGAGAGAUCCCGCCGUU
CP000473.1/3413964-3414030 AAAGGGUCCG--CCUGGGUAGUA--CGGACCCUGCACUCAGAGGGUUGGCGGCGGGAGGGGUCUCGCCGCC
#=GC SS_cons               :::<<<<<<<<._.______....>>>>>>>>::::::::::::::.<<<<<<<<<______>>>>>>>>>
#=GC RF                    AAaGgccCcGA.C.uggGUA....UCgGggcCugcACUcAgaGggU.GGCGGcGgGAGgGguCcCgCCGCC
//
