# STOCKHOLM 1.0
#=GF ID AdoCbl
#=GF AC RF01482
#=GF DE AdoCbl (Cobalamin/B12) riboswitch aptamer
#=GF AU Osuch I
#=GF GA 50.0
#=GF NC 49.9
#=GF TC 50.0
#=GF PI rli55; AdoCbl_riboswitch
#=GF SE INFERNAL
#=GF SS Published; PMID:19246383
#=GF TP Cis-reg; riboswitch;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF CL CL00101
#=GF DR SO; 0000035; riboswitch;
#=GF DR GO; 0045893; positive regulation of transcription, DNA-templated;
#=GF DR GO; 0046336; ethanolamine catabolic process;
#=GF RN [1]
#=GF RM 19246383
#=GF RT Multiple posttranscriptional regulatory mechanisms partner to control
#=GF RT ethanolamine utilization in Enterococcus faecalis.
#=GF RA Fox KA, Ramesh A, Stearns JE, Bourgogne A, Reyes-Jara A, Winkler WC,
#=GF RA Garsin DA
#=GF RL Proc Natl Acad Sci U S A. 2009;106:4435-4440.
#=GF RN [2]
#=GF RM 19448609
#=GF RT The Listeria transcriptional landscape from saprophytism to virulence.
#=GF RA Toledo-Arana A, Dussurget O, Nikitas G, Sesto N, Guet-Revillet H,
#=GF RA Balestrino D, Loh E, Gripenland J, Tiensuu T, Vaitkevicius K, Barthelemy
#=GF RA M, Vergassola M, Nahori MA, Soubigou G, Regnault B, Coppee JY, Lecuit M,
#=GF RA Johansson J, Cossart P
#=GF RL Nature. 2009;459:950-956.
#=GF RN [3]
#=GF RM 25146291
#=GF RT Riboswitches. A riboswitch-containing sRNA controls gene expression by
#=GF RT sequestration of a response regulator.
#=GF RA DebRoy S, Gebbie M, Ramesh A, Goodson JR, Cruz MR, van Hoof A, Winkler WC,
#=GF RA Garsin DA
#=GF RL Science. 2014;345:937-940.
#=GF RN [4]
#=GF RM 25794617
#=GF RT Bacterial riboswitches cooperatively bind Ni(2+) or Co(2+) ions and
#=GF RT control expression of heavy metal transporters.
#=GF RA Furukawa K, Ramesh A, Zhou Z, Weinberg Z, Vallery T, Winkler WC, Breaker
#=GF RA RR
#=GF RL Mol Cell. 2015;57:1088-1098.
#=GF RN [5]
#=GF RM 28483920
#=GF RT Cobalamin riboswitches exhibit a broad range of ability to discriminate
#=GF RT between methylcobalamin and adenosylcobalamin.
#=GF RA Polaski JT, Webster SM, Johnson JE Jr, Batey RT
#=GF RL J Biol Chem. 2017;292:11650-11658.
#=GF WK Cobalamin_riboswitch
#=GF SQ 7

AM263198.1/1141155-1141305   AUUCGUUCAUACAAAC-A-AGUUAGAUAAUGGAAGUCUGGUGAAAAUCCAGCACGGUCCCGCCACUGUAAG-GAGU----UAGA-CACUC-UAAGUCAGGUCUUUUAUCUAGUUGUUUUAACUGGUUAUACUGCUUCGAGGC-AAAGCAUGUAUAAUUCUU
AL596167.1/185724-185873     AUUCGUUCAUACAAAC-A-GUUA-GAUACUGGAAGUCUGGUGAAAAUCCAGCACGGUCCCGCCACUGUAAG-GAGU----UAGA-CACUC-UAAGUCAGGUCUUUUAUCUAAUUGUUUUAACUGGUUAUACUGCUUCGAGGC-AAAGCAUGUAUAAUUCUU
CP000387.1/512706-512558     AAUUGAUUUUAGUACU-U-UUAA-GGAUAUGGAAGUCUGGUGUAAAUCCAGCGCGGUCCCGCCACUGUGAU-AAGC----UUUUCAGCUU-UAAGUCAGGUCUUUAUUCUUAAAUUUU--AGUAGAUUUCAUGCCUCGAUGU-AAGGUAGUGAUGUCAGUU
AL591978.1/38103-38252       AUUCGUUCAUACAAAC-A-GUUA-GAUACUGGAAGUCUGGUGAAAGUCCAGCACGGUCCCGCCACUGUAAG-GAGU----UAGA-CACUC-UAAGUCAGGUCUUUUAUCUAAUUGUUUUAACUGGUUAUACUGCUUCGAGGC-AAAGUAUGUAUAAUUCUU
ACAU01000031.1/82562-82413   AAACGAAUAUUUUAUG-A-AAAAUAUGAAUGGAAG-CCAGUGAGAAUCUGGCACGGUCCCGCCACUGUGAAGAAGC----AAGGUUGCUUUUAAGUCAGGUCUUUUCAUUUUUUCAUU--AUUGGGCAUGCUGUUUCGAGGC-AAAACA-GGAUGUUUCUU
AARF01000069.1/20924-20775   GCCACAAUAUAAAAGU-U-U-UA-GGCAAUGGAAGUUUGGUGCAAAUCCAACGCGGUCCCGCCACUGUGAU-AGACCGGAUACC-GGUCU-UAAGUCAGGUCUUUUGCCUAGAAACUUUGAGCAACCAA-CCGCUUCGAGGCGAAAGUG-G--UGGUUUAG
ABGD02000024.1/243122-242978 UCUUAAAAAUAUAUGAA-GCUUC-AGAUGAGGAAA-CGAGUGGGAAUCUCGUACGGUCACGCCACUGUGUA-GCGG----UUAU-ACCGC-AAAGUCAGGUCGUCAUCUGGAG-UCAUAUCCAUCGUUUG-AGCUUCGAGGG-AAAG---GGAGAUGGAUG
#=GC SS_cons                 :::::::::::::(((.(.((((.((((,,,,,,<-<<<<_______>>>>>,,<<<___>>>,<<<---<.-<<<....--<_.>>>>-.>---->>>,,,,,,))))))))))))::::::<<<<<<-<<<<<<______._>>>>>.>->>>>>>:::
#=GC RF                      auuugaauAUAuaagc.a.cuua.GgcaaUGGAAGUCuGGUGaaAAUCCaGCaCGGuCcCgCCACUGUgAg.agGc....Uagu.cgCcu.cAAGUCAGGUCUUUugcCuaagugcuUuaAcuggccaUacugCuUCGAGGc.AAaGca.ggAuggccuUu
//
