# STOCKHOLM 1.0
#=GF ID rli24
#=GF AC RF01461
#=GF DE Listeria sRNA rli22
#=GF AU Osuch I
#=GF GA 100.0
#=GF NC 45.9
#=GF TC 185.1
#=GF SE INFERNAL
#=GF SS Predicted; RNAalifold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 26.73 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 19448609
#=GF RT The Listeria transcriptional landscape from saprophytism to virulence.
#=GF RA Toledo-Arana A, Dussurget O, Nikitas G, Sesto N, Guet-Revillet H,
#=GF RA Balestrino D, Loh E, Gripenland J, Tiensuu T, Vaitkevicius K, Barthelemy
#=GF RA M, Vergassola M, Nahori MA, Soubigou G, Regnault B, Coppee JY, Lecuit M,
#=GF RA Johansson J, Cossart P
#=GF RL Nature. 2009;459:950-956.
#=GF WK Listeria_monocytogenes_non-coding_RNA
#=GF SQ 6

AM263198.1/227004-227161   AGGACUGAGGGAUAUGCUUAGAAUGAGAAAAAUACUCGAAAAAAACAACCAAUCAAGAAUGAAGAUAAUAGGUUUUUCUUUAACGUUCGCGCAUAAUAAUUCCGCGUCUUUUCAAGGUUACGUUCGUUAAAAGUUAGGUCCUUCAAUCUUUCUUGAUU
AE017262.2/273433-273590   AGGACUGAGGGAUAUGCUUAGAAUGAAAAAUAUACUAGAAAAAAACAACCAAUCAAGACAGAAGAUAAUAGGUAUUUCUUUAACGUUCCUGCAUAGCCAACCGGUGUCUUUUCAAGGUAGCGUCCGUUAAAAGUUACGUCCUUCAAUCUUUCUUGAUU
AL591974.1/71029-71186     AGGACUGAGGGAUAUGCUUAGAAUGAAAGAUAUACUAGAAAAAAACAACCAAUCAAGACAGAAGAUAAUAGGUAUUUCUUUAACGUUCCUGCAUAGCUCACCGGUGUCUUUUCAAGGUAGCGUCCGUUAAAAGUUACGUCCUUCAAUCUUUCUUGAUU
AADQ01000025.1/29836-29679 AGGACUGAGGGAUAUGCUUGGAAUGAAAGAUAUGCUAGAAAAAAACAACCAAUCAAGACAGAAGAUAAUAGGUAUUUCUUUAACGUUCCUGCAUAGACAACCGGUGUCUUUUCAAGGUAGCGUCCGUUAAAAGUUAGGUCCUUCAAUCUUUCUUGAUU
CP001602.1/289096-289253   AGGACUGAGGGAUAUGCUUAGAAUGAAAGAUAUGCUAGAAAAAAACAACCAAUCAAGACAGAAGAUAAUAGGUAUUUCUUUAACGUUCCUGCAUAGACAACCGGUGUCUUUUCAAGGUAGCGUCCGUUAAAAGUUAGGUCCUUCAAUCUUUCUUGAUU
CP002004.1/272598-272755   AGGACUGAGGGAUAUGCUUAGAAUGAAAGAUAUACUAGAAAAAAACAACCAAUCAAGACAGAAGAUAAUAGGUAUUUCUUUAACGUUCCUGCAUAGACAACCGGUGUCUUUUCAAGGUAGCGUCCGUUAAAAGUUACGUCCUUCAAUCUUUCUUGAUU
#=GC SS_cons               [[[[-[[[[[[[[((((---(((((,,,,,,,,,,,,<<_____________>>,,,,,,<<<<<___________>>>>>,,)))))--)))),,,,,,,,,,,,,<<<<<---<<______>>--->>>>>,,,,]]]]]]]]-]]]]::::::::
#=GC RF                    agGaCuGagGGauauGCUUAGaauGAAAgAuAUaCUaGaAAAAAACAACCAAuCAAGAcagaaGaUAAUAGGUaUUuCuuuAACguuCcuGCauAgacAacCgGuGUCuuuuCAAGGUagCGUCCGUUaaaaGUUAgguCCuuCaAuCuuUCUUGAUU
//
