# STOCKHOLM 1.0
#=GF ID snoR2
#=GF AC RF01292
#=GF DE Small nucleolar RNA snoR2/U65
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 44.0
#=GF NC 43.9
#=GF TC 44.1
#=GF SE Predicted; WAR; Wilkinson A
#=GF SS Predicted; WAR; Wilkinson A
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 29.71 -Z 2958934 CM SEQDB
#=GF CL CL00042
#=GF DR URL; http://bioinf.scri.sari.ac.uk/cgi-bin/plant_snorna/home;
#=GF DR URL; http://lowelab.ucsc.edu/snoRNAdb/;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Arabidopsis_thaliana300185;
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF RN [1]
#=GF RM 9664033
#=GF RT Localization and processing from a polycistronic precursor of novel
#=GF RT snoRNAs in maize.
#=GF RA Shaw PJ, Beven AF, Leader DJ, Brown JW
#=GF RL J Cell Sci. 1998;111:2121-2128.
#=GF WK Small_nucleolar_RNA
#=GF SQ 11

AC007233.7/16823-16971     UGUCCGAUGCCACGUCGACGGUAGCU-------UUAGGGCAAUGAUCCUCGAUGCUAC-AUUGGACAUAAACAAA-----U--------GUACGU------GUUUCGCUUACUGAUAGGAACCUGUGGAUCUUGAAUUGAUUUACGAUCUA-CGGAGCC--AUUUCGGCGAUUACAUUU
DQ108823.1/379-527         UGUCCGAUGCCACGUCGACGGUAGCU-------UUAGGGCAAUGAUCCUCGAUGCUAC-AUUGGACAUAAACAAA-----U--------GUACGU------GUUUCGCUUACUGAUAGGAACCUGUGGAUCUUGAAUUGAUUUACGAUCUA-CGGAGCC--AUUUCGGCGAUUACAUUU
Y11049.1/506-650           GGCCUGAUGCCACGUCUCUGGUAGCU-------ACAU-GCUUUGACCAGAGAUGCUAUGAUCAGGCCGAUACAAA-----A--------GU---C------GUUUCACAUGUUGAUAGGAACCUG-GGGAC-GGCUUCUCCAUCUGUCCCA-CAGAGCC-GGUUUCUGUGAUCACAUUC
AARH01014343.1/1683-1829   GGUCCGAUGCCACGUUGCUGGUAGCCA------AAAUGGCGUUGACCGGCAAUGCUAUGAUUGGACCGAAACAAA-----U---------UCCAU------GUUUCGCUUGCUGAUAGGAAUCUGUGGAUCCUAUUCUGUU----GAUCCA-UGGAGCC-GUUUUCGGCGAUUACAUUU
AM460179.2/5268-5416       GGUCCGAUGCCACGUCGCCGGUAGCC-------AUU-GGCGAUGACCGGCGAUGCUAUGAUUGGACCGAUAUCAA-----U--------CUA--U------GUUUCGCAUGCUGAUAGGAACCUGUGGAUCAGGUUUAUGCCGUUGAUCUA-CGGAGCCGAUUUUUUGCGAUUACAUUU
AASG02011273.1/6035-5889   GGUCCAAUGCCACGUCGCCGGUAGCC-------AUGAGGCGUUGACCGGCGAUGCUAUGAUUGGACCUAAAUCAA-----U--------UU-CUU------GUUUCGCUGCCUGAUAGGAAUCUGUGGAUCUGAUUUCUUU---UGAUUCA-UGGAGCC-GAUUUCGGCGAUUACAUUC
AJ489967.1/1-152           GGCCUGAUGCCACGUCACUGUUAGCC--------ACGAGCAUUGAGCUGUGAUGCUAUGAUCAGGCCGAGACAAAGCUGAU--------UCUGGC------GUCUCACAAGUUGAUAGGAACCUGGGGACUGCUGUUCCAU---CGGUCCA-CAGAGCC-GGUUUCUGUGACUACAUUU
AY013245.2/56757-56907     GGCCUGAUGCCACGUCACCUGUAGCU-------AU--GGCUUUGACCGGUGAUGCUUUGAUUAGGCCAAAACCGA-----G--------UUGGUUUCGGACGUUUCACAUGUUUAUAGGAACCUG-GGACUGCAUCUCCAU---CGGUCUA-CAGAGCC-GGUUUCUGUGAUUACAUUU
AC140849.8/90491-90328     GGUCUGAUGCCACGUCUUUGAUAGCUACAUAUAUUUGAGCUCUGAUCAAAGAUGCUAUGAUUGGACCAAAAUCAA-----GAGUGUUAAUCAUUU------GUUUCGCAUUCUGAUAGGAAUCUGCUGAUCUUAUAUAUA---AUGAUCCUGCAGAGCC-GAUUUGUGCGAUUACAUUU
AAAA02007032.1/12923-12773 GGCCUGAUGCCACGUCACCUGCAGCU---------ACGGCUUUGACCGGUGAUGCUUUGAUUAGGCCAAAACAGA-----G--------UUGGUUUCCUACGUUUCACAUGUUGAUAGGAACCUG-GGACUGCAUCUCCAU---CGGUCUA-CAGAGCC-CGUUUCUGUCAUUACAUUU
CP002685.1/7520754-7520902 UGUCCGAUGCCACGUCGACGGUAGCUAU-----UUUUGGCAAUGAUCCUCGAUGCUAC-AUUGGACAUAGACAAA-----U--------GUACGU------GUUUCGCUUACUGAUAGGAACCUGUGGAUCUUGAUUCUAU--ACGAUCUC-CGGAGCC--AUUUCGGCGAUUACAUUU
#=GC SS_cons               :<<<<<<<<---<<<<<<-<<<-<<<.......____>>>---->>>->>>>>>--->->>>>>>>:::::::::.....:........::::::......:::<<<<<--------<<---<<<-<<<<<__________..__>>>>>-.>>>-->>.------>>>>>::::::::
#=GC RF                    gGcCcgAUgCCACgUCgccGguAGCc.......auaugGCuuUGacCagcGAuGCUAcGAUcgGgCcaAaAcaAA.....u........uUacuU......GUUUCgCaugcUGAUAGGAAcCuGugGaccuuauuUcuaU..augguCcA.CaGAGCC.gaUUUcuGcGAUUACAUUU
//
