# STOCKHOLM 1.0
#=GF ID mir-278
#=GF AC RF00729
#=GF DE mir-278 microRNA precursor family
#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
#=GF GA 55.0
#=GF NC 54.0
#=GF TC 55.2
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR MIPF; MIPF0000155;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF RN [1]
#=GF RM 17989255
#=GF RT Systematic discovery and characterization of fly microRNAs using 12
#=GF RT Drosophila genomes.
#=GF RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M
#=GF RL Genome Res. 2007;17:1865-1879.
#=GF RN [2]
#=GF RM 17989254
#=GF RT Evolution, biogenesis, expression, and target predictions of a
#=GF RT substantially expanded set of Drosophila microRNAs.
#=GF RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC
#=GF RL Genome Res. 2007;17:1850-1864.
#=GF RN [3]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF WK Mir-278_microRNA_precursor_family
#=GF SQ 26

URS000075EDB9_7091/10-79  GCUACGCCCGGACGAACUUCCCAGCUCGGCC---------GACAAUCAGG-----GGUCGGUGGGAUCUUCGUCCGUUUGUAUC
URS0000D4F34E_7130/16-86  GCUACGCCCGGACGAACUUCCCAGUUCGGCC------GACAUUAAACG-------GGUCGGUGGGAUCUUCGUCCGUUUGUAUC
URS0000D5580A_34740/19-88 GCUACGCCCGGACGAACUUCCCAGAUCGGCC------GACACAAAGU--------GGUCGGUGGGAUCUUCGUCCGUUUGUAUC
URS0000D5323E_7739/6-75   --CCCGCCCGGACGAGAACCCUUCGCCAGUC-----GUCGGGCUUUAGCA-----GAUCGGUGGGGUUUUCGUUCGAGUGGG--
URS0000D55BF5_7741/7-75   --CCCACCCGGGCGAACACCGU-CGCCAGUC-----GUCGGGCUUCAGCA-----GAUCGGUGGGGUUUUCGUUCGAGUGGG--
URS0000D4FE25_6945/16-94  GAUGUGUCCGGAUGAAUUUCUCGCC-UGGCC--GUUUCCGGUCCCCCGGAACA--GGUCGGUGGGAUUUUCGUCCGUUUACGUC
URS00001BE7AE_7237/11-83  GGUGCGACCGGACGAUGGUUCACAA-CGACC---GUGUCUCUUAAACU-------GGUCGGUGGGACUUUCGUCCGUUUGUAAC
URS000013142F_7234/11-83  GGUGCGACCGGACGAUGGUUCACAA-CGACC---GUGUCUCUUAAACU-------GGUCGGUGGGACUUUCGUCCGUUUGUAAC
URS000016DBD5_7222/10-84  GGUGCGACCGGAUGACGGUUCACAA-CGACC-GUGCUUAUUUUUAACU-------GGUCGGUGGGACUUUCGUCCGUUUGUAAC
URS00002DCB49_7244/10-84  GGUGCGACCGGAUGAUGGUUCACAA-CGACC-GUGCAUACUUUUAACU-------GGUCGGUGGGACUUUCGUCCGUUUGUAAC
URS00002C2BE8_7230/10-85  GGUGCGACCGGAUGAUGGUUCACAA-CGACCGUACAGUUUUUUCAACG-------GGUCGGUGGGACUUUCGUCCGUUUGUAAC
URS0000083BB2_7260/11-83  GGUGCGACCGGAUGACGGUUCACAA-CGACC---GUGUCAAUUUUACU-------GGUCGGUGGGACUUUCGUCCGUUUGUAAC
URS0000079047_7240/11-83  GGUGCGACCGGAUGAUGGUUCACAA-CGACC---GUGUCCUUUAAACG-------GGUCGGUGGGACUUUCGUCCGUUUGUAAC
URS0000079047_7245/11-83  GGUGCGACCGGAUGAUGGUUCACAA-CGACC---GUGUCCUUUAAACG-------GGUCGGUGGGACUUUCGUCCGUUUGUAAC
URS0000079047_7238/11-83  GGUGCGACCGGAUGAUGGUUCACAA-CGACC---GUGUCCUUUAAACG-------GGUCGGUGGGACUUUCGUCCGUUUGUAAC
URS0000079047_7220/11-83  GGUGCGACCGGAUGAUGGUUCACAA-CGACC---GUGUCCUUUAAACG-------GGUCGGUGGGACUUUCGUCCGUUUGUAAC
URS000064AEE1_7227/11-83  GGUGCGACCGGAUGAUGGUUCACAA-CGACC---GUGUCAUUUAAACG-------GGUCGGUGGGACUUUCGUCCGUUUGUAAC
URS0000238F88_7217/11-83  GGUGCGACCGGAUGAUGGUUCACAA-CGACC---GUGUCCUUCGAACG-------GGUCGGUGGGACUUUCGUCCGUUUGUAAC
URS00004BE8DF_7165/6-80   GGUACGGACGGACGAUAGUCUUCAA-CGACC----GUUCCGUUUGACACGA----GGUCGGUGGGACUUUCGUCCGUUUGUAAG
URS0000D55C7F_7159/2-77   GGUGCGAACGGACGAUAGUCUUCAG-CGGCC-----GUGCAUUUGAUAGAAUU--GGUCGGUGGGACUUUCGUCCGUUUGUAAC
URS0000D534D2_7176/14-93  GGUGCGGACGGACGAUAGUCUUCAG-CGACC---GUGCCAUUUGAAAACCCUUUGGGUCGGUGGGACUUUCGUCCGUUUGUAAC
URS000075AF18_7029/1-66   -------ACGGACGAAGGUUU-CAU-CAAUC-GUGUUACAGAUAAACGUGUC---GGUCGGUGGGACUUUCGUUCGUUU-----
URS0000759F70_7460/9-83   AGUGUGUCCGGAUGA-GGUCUUCAU-CGACC------GUGAUUUAAUUUCAUAA-GGUCGGUGGGACUUUCGUCCGUUUGCAAG
URS0000D50E57_7654/10-86  CUUCUCUUGGAAUGAAAGCCU-CGC-CAAUC----UGUCAUUGUUACUAAACAA-GGUCGGUGGGACUUUCGUUCGACUAGAAG
URS0000D4FE40_46514/15-87 CGUCUUUUAGAAUGAAAGUUU-CGC-CAAUC--GGCUUCCCUACGACA-------GAUCGGUGGGACUUUCGUUCGAUUAGAUG
URS0000D4F0FC_6669/15-87  GUUUUCGAGAGACGGAAGUCU-UGCACAAGA--------AAUUUAAAAAAACA--GGUCGGUGGGACUUUCGUCCGUGUGUGAU
#=GC SS_cons              ::<<<<<-<<<<<<<-<<<<<-<<-.<<<<<...________________.....>>>>>->>>>>>>->>>>>>>->>>>>::
#=GC RF                   GgUgCgaCCGGAcGAaaGUCcacaa.CGAcC...GUGUCauUuuaAcgaa.....GgUCGGuggGACuUUCgUCCGUuuGcAAc
//
