0  structures 24  species 25  sequences

Family: snR189 (RF01250)

Description: Small nucleolar RNA snR189

Summary

Clan

This family is a member of clan (CL00021), which contains the following 6 members:

snopsi28S-3327 SNORA16 SNORA2 snR189 snR46 S_pombe_snR46

Wikipedia annotation Edit Wikipedia article

The Rfam group coordinates the annotation of Rfam families in Wikipedia. This family is described by a Wikipedia entry Small nucleolar RNA. More...

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Sequences

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Table view (25 sequence regions)

Original order Download FASTA Accession Bit score Type Start End Description Species View context
0
X62452.1 N/A seed 873 682 S. cerevisiae DNA for long ORF (YCR 601) Saccharomyces cerevisiae (baker's yeast) ENA graphic
1
AABZ01000039.1 N/A seed 16,243 16,432 Saccharomyces mikatae IFO 1815 contig_216, whole genome shotgun sequence. Saccharomyces mikatae IFO 1815 ENA graphic
2
AACA01000006.1 N/A seed 89,474 89,283 Saccharomyces bayanus MCYC 623 contig_94, whole genome shotgun sequence. Saccharomyces bayanus MCYC 623 ENA graphic
3
AACI02000034.1 N/A seed 9,484 9,289 Saccharomyces kudriavzevii IFO 1802 YM6553-Contig02.2075, whole genome shotgun sequence. Saccharomyces kudriavzevii IFO 1802 ENA graphic
0
BK006937.2 237.70 full 178,798 178,607 TPA: Saccharomyces cerevisiae S288C chromosome III, complete sequence. Saccharomyces cerevisiae S288c ENA graphic
1
JH796485.1 218.20 full 7,924 7,729 Saccharomyces kudriavzevii IFO 1802 unplaced genomic scaffold c2035, whole genome shotgun sequence. Saccharomyces kudriavzevii IFO 1802 ENA graphic
2
CM001565.1 210.30 full 169,001 168,811 Saccharomyces arboricola H-6 chromosome III, whole genome shotgun sequence. Saccharomyces arboricola H-6 ENA graphic
3
HE616747.1 86.20 full 544,805 544,586 Torulaspora delbrueckii CBS 1146 chromosome 6, complete genome Torulaspora delbrueckii CBS 1146 ENA graphic
4
CP058605.1 79.10 full 1,138,446 1,138,246 CP058605.1 Zygotorulaspora mrakii strain NRRL Y-6702 chromosome 2 Zygosaccharomyces mrakii ENA graphic
5
DS480383.1 74.20 full 126,736 126,915 Vanderwaltozyma polyspora DSM 70294 KpolScaffold2002 genomic scaffold, whole genome shotgun sequence. Vanderwaltozyma polyspora DSM 70294 ENA graphic
6
LT598469.1 69.10 full 669,103 669,236 Lachancea mirantina genome assembly, chromosome: G Lachancea mirantina ENA graphic
7
LT598486.1 67.90 full 348,663 348,825 Lachancea fermentati genome assembly, chromosome: G Lachancea fermentati ENA graphic
8
HE612860.1 67.50 full 740,259 739,986 Tetrapisispora phaffii CBS 4417 chromosome 5, complete genome Tetrapisispora phaffii CBS 4417 ENA graphic
9
CR382122.1 66.90 full 666,607 666,503 Kluyveromyces lactis strain NRRL Y-1140 chromosome B complete sequence. Kluyveromyces lactis ENA graphic
10
CU928170.1 66.30 full 344,383 344,555 Lachancea thermotolerans CBS 6340 chromosome F complete sequence. Lachancea thermotolerans CBS 6340 ENA graphic
11
CP059270.1 64.60 full 420,444 420,665 CP059270.1 Torulaspora sp. CBS 2947 strain CBS2947 chromosome 4 Torulaspora sp. CBS 2947 ENA graphic
12
HE576760.1 62.80 full 564,497 564,286 Naumovozyma castellii CBS 4309 chromosome 9, complete genome Naumovozyma castellii CBS 4309 ENA graphic
13
AE016818.2 61.60 full 344,509 344,687 Ashbya gossypii ATCC 10895 chromosome V, complete sequence. Ashbya gossypii ATCC 10895 ENA graphic
14
LT598461.1 61.30 full 332,599 332,710 Lachancea dasiensis CBS 10888 genome assembly, chromosome: H Lachancea dasiensis CBS 10888 ENA graphic
15
CU928175.1 60.90 full 951,861 951,664 Zygosaccharomyces rouxii strain CBS732 chromosome C complete sequence. Zygosaccharomyces rouxii CBS 732 ENA graphic
16
LN736370.1 60.20 full 327,537 327,679 Lachancea lanzarotensis strain CBS 12615 genome assembly, scaffold: LALA0S11 Lachancea lanzarotensis ENA graphic
17
JAEUBF010000325.1 55.10 full 30,272 30,143 JAEUBF010000325.1 Wickerhamomyces mucosus strain CBS6341 scaffold51, whole genome shotgun sequence Wickerhamomyces mucosus ENA graphic
18
CP002504.1 53.60 full 275,962 275,775 Eremothecium cymbalariae DBVPG#7215 chromosome 8, complete sequence. Eremothecium cymbalariae DBVPG#7215 ENA graphic
19
MPUK01000003.1 52.90 full 621,184 620,998 Cyberlindnera fabianii strain 65 BON22_Sc03, whole genome shotgun sequence. Cyberlindnera fabianii ENA graphic
20
FXLY01000003.1 51.70 full 1,277,959 1,278,150 Kazachstania saulgeensis genome assembly, contig: scaffold_02 Kazachstania saulgeensis ENA graphic

Alignment

There are various ways to view or download the seed alignments that we store. You can use a sequence viewer to look at them, or you can look at a plain text version of the sequence in a variety of different formats. More...

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Alignment format:
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Secondary structure

This section shows a variety of different secondary structure representations for this family. More...

You can view the secondary structure of the family using the VARNA applet. You can see more information about VARNA iself here.

Species distribution

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Colour assignments

Archea Archea Eukaryota Eukaryota
Bacteria Bacteria Other sequences Other sequences
Viruses Viruses Unclassified Unclassified
Viroids Viroids Unclassified sequence Unclassified sequence

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References

This section shows the database cross-references that we have for this Rfam family.

Literature references

  1. Thompson JR, Zagorski J, Woolford JL, Fournier MJ Nucleic Acids Res. 1988;16:5587-5601. Sequence and genetic analysis of a dispensible 189 nucleotide snRNA from Saccharomyces cerevisiae. PUBMED:3290853

External database links

Curation and family details

This section shows the detailed information about the Rfam family. We're happy to receive updated or improved alignments for new or existing families. Submit your new alignment and we'll take a look.

Curation

Seed source Predicted; WAR; Wilkinson A
Structure source Predicted; WAR; Wilkinson A
Type Gene; snRNA; snoRNA; HACA-box;
Author Wilkinson AORCID logo
Alignment details
Alignment Number of
sequences
full 21
seed 4

Model information

Build commands
cmbuild -F CM SEED
cmcalibrate --mpi CM
Search command
cmsearch --cpu 4 --verbose --nohmmonly -T 29.00 -Z 2958934 CM SEQDB
Gathering cutoff 50.0
Trusted cutoff 51.7
Noise cutoff 49.8
Covariance model Download
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