Rfam: Seed sequence alignment for RF03054

URS0000D69307_1246301/1-48 Variovorax paradoxus B4 0.0 URS0000D69307_543728/1-48 Variovorax paradoxus S110 0.0 URS0000D69307_1150395/1-48 Variovorax paradoxus 4MFCol3.1 0.0 URS0000D69133_1157708/1-64 Variovorax paradoxus 110B 0.0 URS0000D6778F_12908/1-74 unclassified sequences 0.0 URS0000D6BBC0_12908/1-69 unclassified sequences 0.0 URS0000D66571_12908/1-68 unclassified sequences 0.0 URS0000D6B4CC_12908/1-79 unclassified sequences 0.0 URS0000D69CEE_12908/1-64 unclassified sequences 0.0 URS0000D68BB8_1268622/1-60 Acidovorax sp. MR-S7 0.0 URS0000D672F3_995087/1-65 Acidovorax avenae subsp. avenae RS-1 0.0 URS0000D67FEF_397945/1-66 Acidovorax citrulli AAC00-1 0.0 URS0000D6BC36_643561/1-67 Acidovorax avenae subsp. avenae ATCC 19860 0.0 URS0000D6835F_12908/1-51 unclassified sequences 0.0 URS0000D69A1D_12908/1-50 unclassified sequences 0.0 URS0000D69A1D_426114/1-50 Thiomonas sp. 3As 0.0 URS0000D6AB2A_12908/1-50 unclassified sequences 0.0 URS0000D674B3_12908/1-52 unclassified sequences 0.0 URS0000D675B8_384765/1-51 Labrenzia aggregata IAM 12614 0.0 URS0000D6D054_1397530/1-51 Labrenzia sp. C1B10 0.0 URS0000D6825E_12908/1-50 unclassified sequences 0.0 URS0000D66405_1122929/1-52 Pannonibacter phragmitetus DSM 14782 0.0 URS0000D6726B_12908/1-51 unclassified sequences 0.0 URS0000D6687E_12908/1-53 unclassified sequences 0.0 URS0000D6CD5E_12908/1-51 unclassified sequences 0.0 URS0000D66249_12908/1-51 unclassified sequences 0.0 URS0000D66A2A_12908/1-53 unclassified sequences 0.0 URS0000D6C6B7_1107544/1-49 Agrobacterium tumefaciens 5A 0.0 URS0000D6C6B7_936136/1-49 Rhizobium leguminosarum bv. viciae 248 0.0 URS0000D6C6B7_216596/1-49 Rhizobium leguminosarum bv. viciae 3841 0.0

GCGCAGAGUAGAAGCGUUCAGC..C----........................CUUGC....................................----...GGC.AGGAAAUUGCUCUUUCA GCGCAGAGUAGAAGCGUUCAGC..C----........................CUUGC....................................----...GGC.AGGAAAUUGCUCUUUCA GCGCAGAGUAGAAGCGUUCAGC..C----........................CUUGC....................................----...GGC.AGGAAAUUGCUCUUUCA GCGCAGAGUAGAAGCGUUCAGC..CGCGCggugc...................CCCAC...............................gcaucCC--...GGC.GGGAAAUUGCUCUUUCA GCGCAGAGUAGAAGCGUUCAGC..CCGG-ugcaa...................GUUUUcgaauuug.......................uugcaCCCGc..GGC.AGGAAAUUGCUCUUUUA CCGAAGAGUAGAAGCGUUCAAC..CGCCCuucccu..................AUCCCg.............................agcgaaGGGC...GGC.AGGAAAUUGCUCUUGAG CGCAGGAGUAGAAGCGUUCACC..GCGCAugcau...................CACGUca.............................gugca-UCG...CGGcCGGAAAUUGCUCCUGGA GGCAAGAGUAGAAGCGUUCACU..GCGUUgcccccu.gugca...........GUCC-.......................ugcac...gacgcGAUGc..CAGuCGGAAAUUGCUCUUGAA CCCUUGAGUAGAAGCGUUCAGC..ACACAggc.....................CCCGC.................................gccUGUGu..UGCcCGGAAAUUGCUCAGUUU CCGGCGAGUAGAAGCGUUCAGC..ACGGCgg......................GAC--..................................ccGCCGu..CGCcCGGAAAUUGCUCAGUUC CCGGCGAGUAGAAGCGUUCAGC..ACGGUgggg....................CCCG-................................ccccGCCGu..CGCcCGGAAAUUGCUCGAUCC CCGGCGAGUAGAAGCGUUCAGC..ACGGCgggg....................CCAGC................................cuccGCCGc..CGCcCGGAAAUUGCUCGAUCC CCGGCGAGUAGAAGCGUUCAGC..ACGGCgggg....................CCACCc...............................cuucGCCGc..CGCcCGGAAAUUGCUCGAUCC GGCGUGAGUAGAAGCGGUCAGC..AGC--........................UCAG-....................................--GC...UGC.GGGACAUUGCUCCAGCC UGCAGGAGUAGAAGCGGUCAGC..GGC--........................GAU--....................................--GC...UGC.GGGACAUUGCUCCCCUG UGCAGGAGUAGAAGCGGUCAGC..GGC--........................GAU--....................................--GC...UGC.GGGACAUUGCUCCCCUG CGCAGGAGCAGAAGCGGUCAGC..GGC--........................GAU--....................................--GC...UGC.GGGACAUUGCUCUUCUG UGAUGGAGUAGAAGCGGUUAGC..AGC--........................CUUGU....................................--GC...UGC.GGGACAUUGCUCCGCAU AUGUGGAGUAGAAGCUGUCAGU..GCC--........................GUUC-....................................--GG...CAC.GGGUCAUUGCUCCCGGA AUGUGGAGUAGAAGCUGUCAGU..GC---........................CCAUGa...................................---G...CAC.GGGUCAUUGCUCCCGGA GCCAGGAGUAGAAGCGGUUAGC..GCC--........................AUC--....................................--GG...CGC.GGGACAUUGCUCCUUUU CCCCGGAGUAGAAGCUGUCAGC..GCCA-........................UCC--....................................-CGG...CGU.GGGUCAUUGCUCCUCAA CCCCGGAGUAGAAGCAGUCAGC..GCCC-........................CCA--....................................-GGG...UGC.-GGUCAUUGCUCCCCCA ACCCGGAGUAGAAGCUGUCAGC..GCC--........................UGCCUc...................................--GG...CGC.CGGUCAUUGCUCCCUUC GAUGGGAGUAGAAGCAGUCAGC..GCC--........................GCGC-....................................--GG...CGC.CGGUCAUUGCUCCUUUA AAUAGGAGUAGAAGCAGUCAAC..GCC--........................GUCC-....................................--GG...CGC.GGGUCAUUGCUCCUUCA GCAGGGAGUAGAAGCUGUCAGC..GCCG-........................CGCG-....................................-CGG...CGC.AGGUCAUUGCUCCGACA CCUGCGAGUAGAAGCGGUCUGA..GC---........................CUCG-....................................---G...UUC.UGGACAUUGCUCGACGG CCUGCGAGUAGAAGCGGUCUGA..GC---........................CUCG-....................................---G...UUC.UGGACAUUGCUCGACGG CCUGCGAGUAGAAGCGGUCUGA..GC---........................CUCG-....................................---G...UUC.UGGACAUUGCUCGACGG