Rfam: Seed sequence alignment for RF03054

URS0000D6876D_12908/1-78 unclassified sequences 0.0 URS0000D66EC0_358220/1-78 Acidovorax sp. KKS102 0.0 URS0000D6B384_1268622/1-60 Acidovorax sp. MR-S7 0.0 URS0000D6C621_12908/1-78 unclassified sequences 0.0 URS0000D65809_12908/1-78 unclassified sequences 0.0 URS0000D67A84_12908/1-79 unclassified sequences 0.0 URS0000D6C6A8_12908/1-80 unclassified sequences 0.0 URS0000D6AFF5_1042878/1-50 Cupriavidus necator N-1 0.0 URS0000D68592_977880/1-74 Cupriavidus taiwanensis LMG 19424 0.0 URS0000D6BB52_12908/1-59 unclassified sequences 0.0 URS0000D6786C_1235457/1-64 Ralstonia sp. AU12-08 0.0 URS0000D698D7_1040979/1-74 Cupriavidus taiwanensis STM 6070 0.0 URS0000D6D439_1265502/1-66 Caldimonas manganoxidans ATCC BAA-369 0.0 URS0000D68B09_795665/1-60 Hydrogenophaga sp. PBC 0.0 URS0000D674B2_12908/1-55 unclassified sequences 0.0 URS0000D6A8C0_887062/1-57 Hylemonella gracilis ATCC 19624 0.0 URS0000D6C66E_887062/1-57 Hylemonella gracilis ATCC 19624 0.0 URS0000D66243_12908/1-56 unclassified sequences 0.0 URS0000D6AA11_12908/1-57 unclassified sequences 0.0 URS0000D67ADA_12908/1-55 unclassified sequences 0.0 URS0000D6C27B_12908/1-68 unclassified sequences 0.0 URS0000D6A88D_358220/1-49 Acidovorax sp. KKS102 0.0 URS0000D6A88D_12908/1-49 unclassified sequences 0.0 URS0000D6596C_1265504/1-51 Curvibacter lanceolatus ATCC 14669 0.0 URS0000D6888D_1246301/1-68 Variovorax paradoxus B4 0.0 URS0000D69937_12908/1-68 unclassified sequences 0.0 URS0000D6C6CC_543728/1-68 Variovorax paradoxus S110 0.0 URS0000D6C6CC_1150395/1-68 Variovorax paradoxus 4MFCol3.1 0.0 URS0000D681A9_1157708/1-68 Variovorax paradoxus 110B 0.0 URS0000D66936_595537/1-68 Variovorax paradoxus EPS 0.0

GGCAAGAGUAGAAGCGUUCACU..GCGUUgucccugugc..............CAUCCu.........................gcac.gaggcGACGc..CAGuCGGAAAUUGCUCUUUAA GGCAAGAGUAGAAGCGUUCACU..GCGUUgucccugugc..............CAUCCu.........................gcacgggg.cAAUGc..CAGuCGGAAAUUGCUCUUGAA CGCGAGAGUAGAAGCGUUCAGC..-CGGGccg.....................CAGG-.................................ccgCCCG...CGC.GGGUCAUUGCUCUUGUU GCCAAGAGUAGAAGCGUUCAGC.gCUGCAgcgucc..gccc............ACCA-........................gggugcggaggcUGUA...GGC.GGGUCAUUGCUCUUGAA GCCAAGAGUAGAAGCGUUCAGC.gCUGCUgccucggcccc.............ACAG-.........................gggccugaagcAGCA...GGC.GGGUCAUUGCUCUUGAA GGCAAGAGUAGAAGCGUUCACU..GCGUUgcccccugug..............CCAUCc.........................ugcacggggcGAUGc..CAGuCGGAAAUUGCUCUUGAA GGCAAGAGUAGAAGCGUUCACU..GCGCAgcccuucaugc.............CGUGGa........................gcaugagggccAGGC...CAGcCGGAAAUUGCUCUUGAA CUACGGAGUAGAAGCGUUCAGC..GG---........................CACG-....................................---C...CGCcCGGAAAUUGCUCCCGAU GGCAAGAGUAGAAGCGUUCACC..AGCCGc...gcgc................CAGAUcgau........................gcgcauggCGGC...UGGcCGGGAAUUGCUCUUGAA GCCAAGAGUAGAAGCGUUCACC..UGCA-........................CAGUUugcu................................-UGC...AGUcCGGAAAUUGCUCUUGAA UGCAAGAGUAGAAGCGUUCACC..AGCCGcgca....................CACCA................................ugc.CGGC...UGGcCGGGAAUUGCUCUUGAA GGCAAGAGUAGAAGCGUUCACC..AGCCGcgcg....................CCAGAucgaugcgca......................ugcg-GGC...UGGcCGGGAAUUGCUCUUGAA GGCAAGAGUAGAAGCGUUCACC..GUCCUggugc...................CCCAA...............................gc.ucAGAA...CGGcCGGAAAUUGCUCUUGAA GGCAGGAGUAGAAGCGUUCAGC..GGGUCgc......................CCCAC..................................gc-ACC...CGCcCGGAAAUUGCUCUGUAG GCCAAGAGUAGAAGCGUUCAGC..AGCC-........................CGCAC....................................-GGC...CGCcCGGAAAUUGCUCUUGGC CCCAAGAGUAGAAGCGUUCAGC..GCAGG........................CCCAG....................................CCAG...CGCcCGGAAAUUGCUCUGGAA GGCAGGAGUAGAAGCGUUCAGC..GCAGG........................CCCAG....................................CCAG...CGCcCGGAAAUUGCUCUUGAA GCCAAGAGUAGAAGCGUUCACC..GGCC-........................UGGUGc...................................-GGC...CGGcCGGAAAUUGCUCUUGAA CCCAGGAGUAGAAGCGUUCAGC..GUUGG........................CCAGC....................................CCGG...CGCcCGGAAAUUGCUCUGGAA AGCGAGAGUAGAAGCGUUCAGC..GGCC-........................GAAA-....................................CAGC...CGCcCGGAAAUUGCUCUUGAA GCCGAGAGUAGAAGCGUUCAGC..GGCAGaugcac..................CAUCGaaa...........................gugc..--GC...CGCcCGGAAAUUGCUCUUGCA GCCAAGAGUAGAAGCGUUCAGC..GG---........................CCA--....................................---C...CGCcCGGAAAUUGCUCUUGAA GCCAAGAGUAGAAGCGUUCAGC..GG---........................CCA--....................................---C...CGCcCGGAAAUUGCUCUUGAA CUCAAGAGUAGAAGCGUUCAGC..GGC--........................CCA--....................................--GC...CGCcCGGAAAUUGCUCUUGAA CGAGAGAGUAGAAGCGUUCAGC..AGCGCacg.....................CACCAcccu.............................uguGCGCu..CGCcCGGAAAUUGCUCUUGAA CGCAAGAGUAGAAGCGUUCAGC..AGCGCacg.....................CACCAccgu.............................uguGCGCc..CGCcCGGAAAUUGCUCUUGAA CGCAAGAGUAGAAGCGUUCAGC..AGCGCacg.....................CACCAcccu.............................uguGCGCc..CGCcCGGAAAUUGCUCUUGAA CGCAAGAGUAGAAGCGUUCAGC..AGCGCacg.....................CACCAcccu.............................uguGCGCc..CGCcCGGAAAUUGCUCUUGAA CGCAAGAGUAGAAGCGUUCAGC..AGCGCacg.....................CACCAcgac.............................uguGCGCc..CGCcCGGAAAUUGCUCUUGAG CGCAAGAGUAGAAGCGUUCAGC..AGCGCacg.....................CACCAcgaa.............................cguGCGCc..CGCcCGGAAAUUGCUCUUGAA