Rfam: Seed sequence alignment for RF03054

URS0000D66A9D_1336753/1-55 Vibrio fluvialis I21563 0.0 URS0000D66A9D_1336752/1-55 Vibrio fluvialis PG41 0.0 URS0000D6AA7B_1116375/1-72 Vibrio sp. EJY3 0.0 URS0000D68684_1219067/1-72 Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 0.0 URS0000D65E33_12908/1-82 unclassified sequences 0.0 URS0000D6D32B_12908/1-63 unclassified sequences 0.0 URS0000D672AC_12908/1-75 unclassified sequences 0.0 URS0000D676EA_563045/1-75 Comamonas testosteroni S44 0.0 URS0000D6C2BE_12908/1-75 unclassified sequences 0.0 URS0000D67758_399795/1-75 Comamonas testosteroni KF-1 0.0 URS0000D67758_12908/1-75 unclassified sequences 0.0 URS0000D67E41_1188252/1-53 Vibrio rumoiensis 1S-45 0.0 URS0000D664F3_1217418/1-87 Cupriavidus sp. HPC(L) 0.0 URS0000D694B3_12908/1-74 unclassified sequences 0.0 URS0000D6A1D1_1009852/1-74 Comamonas testosteroni ATCC 11996 0.0 URS0000D69993_491952/1-59 Marinomonas posidonica IVIA-Po-181 0.0 URS0000D6B091_12908/1-65 unclassified sequences 0.0 URS0000D6A794_12908/1-51 unclassified sequences 0.0 URS0000D678B7_12908/1-67 unclassified sequences 0.0 URS0000D6CBAF_1144317/1-71 Acidovorax sp. CF316 0.0 URS0000D697CA_12908/1-58 unclassified sequences 0.0 URS0000D67BF9_137716/1-72 Ideonella sp. B508-1 0.0 URS0000D684EC_12908/1-78 unclassified sequences 0.0 URS0000D67B77_12908/1-78 unclassified sequences 0.0 URS0000D6A626_1235457/1-85 Ralstonia sp. AU12-08 0.0 URS0000D688FF_12908/1-60 unclassified sequences 0.0 URS0000D6ADFA_995087/1-75 Acidovorax avenae subsp. avenae RS-1 0.0 URS0000D6D340_643561/1-75 Acidovorax avenae subsp. avenae ATCC 19860 0.0 URS0000D6B541_12908/1-100 unclassified sequences 0.0 URS0000D6C65F_12908/1-67 unclassified sequences 0.0

CCCCGGAGUAGAAGCGGUCUGC..AAUC-........................AUCGAc...................................-GAU...UGC.UGGACAUUGCUCCAAUC CCCCGGAGUAGAAGCGGUCUGC..AAUC-........................AUCGAc...................................-GAU...UGC.UGGACAUUGCUCCAAUC ACUAGGAGUAGAAGCGGUCUGU..AAUAG.c..gagcc...............AUUGAga.........................gucucaag.CUAU...UGC.UGGACAUUGCUCCAAUA ACUAGGAGUAGAAGCGGUCUGU..AAUAGcg......................AGCCAuugagacucuca......................agCUAU...UGC.UGGACAUUGCUCCAAUA CUCCUGGGUAGAAGCAGUCAGU..GUCCGc.........caccuu........AUAUUaag.................aaggugaagcaguaagCGGA...UUC.GGGUCAUUGCUCACGGA GUGCUGAGUAGAAGCGUUCAGCacACCACggc.....................CCUG-.................................gccGUGC...CGC.UGGAAAUUGCUCACCCC AUCAAGAGUAGAAGCGUUCAGC..ACGGUgcucugacc...............UUCCCcc.........................ggucag..cAGCUu..CGC.GGGUCAUUGCUCUUGAA AUCAAGAGUAGAAGCGUUCAGC..ACGGUgcucugacc...............UUUCCuc.........................ggucag..cAGCUu..CGC.GGGUCAUUGCUCUUGAA AUCAAGAGUAGAAGCGUUCAGC..ACGGCgcu.cugacc..............UUCCCcc........................ggucagca..GCUU...CGC.GGGUCAUUGCUCUUGAA AUCAAGAGUAGAAGCGUUCAGC..ACGGUgcuucugacc..............AUCGCc.........................ggucag...cAGCUu..CGC.GGGUCAUUGCUCUUGAA AUCAAGAGUAGAAGCGUUCAGC..ACGGUgcuucugacc..............AUCGCc.........................ggucag...cAGCUu..CGC.GGGUCAUUGCUCUUGAA UCUGUGAGUAGAAGCGGUUAGA..UGA--........................AUAGAa...................................--AC...AUC.GGGACAUUGCUCACCAU CGAUCGAGUAGAAGCGGUUAGC..GCCAAcgcauc.cccaacg..........CAUCGccau..................cgcaggccgaugccCCGG...CGC.GGGACAUUGCUCUCACG AUCAAGAGUAGAAGCGUUCAGC.aCGGUGcucuggcc................CUUGUc...........................ggucagca-GCUu..CGC.GGGUCGUUGCUCUUGAA AUCAAGAGUAGAAGCGUUCAGC..ACGGUgcu....cuggcc...........CUUGUc......................ggucag.....caGCUU...CGC.GGGUCAUUGCUCUUGAA AUUAGGAGUAGAAGCUGUCAGG..CGAUUc.......................ACCC-...................................gAAUCuc.GCC.AGGUCAUUGCUCCAUUU CAGAAGAGUAGAAGCGGUCAGA..GG-AAcgc.....................GCGAUaccg.............................gcaACAC...CUC.GGGACAUUGCUCUUGAA UGACAGAGUAGAAGCGUUCAGC..GGU--........................UGCG-....................................--AC...CGC.AGGAAAUUGCUCUGGUG GGCGAGAGUAGAAGCGUUCACC..AGCGGccga....................UUUCG................................ucggCUGUcc.UGGcCGGGAAUUGCUCUUGAG GGUAAGAGUAGAAGCGUUCAGU..CCAGCcaauccgc................AUUGC............................guggaccgGCU-...GGC.GGGUCAUUGCUCUUGAA UCGCCGAGUAGAAGCGUUCAGC..--CCGcgc.....................AGC--.................................gcgCGGC...-GCcCGGAAAUUGCUCAUGUC GUCAAGAGUAGAAGCGUUCAGU..CGCGCaaccguccuc..............CCCG-..........................gag.gcgg.uGC-C...GGC.GGGUCAUUGCUCUUGGA GGCAAGAGUAGAAGCGUUCAGC..GCUGCagcgucugc..cc...........ACCA-.......................gggugcggaggcuGUAG...-GC.GGGUCAUUGCUCUUGAA GGCAAGAGUAGAAGCGUUCAGC..GCUGCagcguccgc..cc...........ACCA-.......................gggugcggagguuGUAG...-GC.GGGUCAUUGCUCUUGAA AGCGAGAGUAGAAGCGUUCACU..GCUGCgu.........gaagugcc.....GCCC-.................gguacuucgguugaucggcGCAG...CGGcCGGAAAUUGCUCUUGAA GGCGAGAGUAGAAGCGUUCAGC..CCGCAu.......................CGCAAca.................................gUGCA...GGC.AGGAAAUCGCUCUUGAU GGCGAGAGUAGAAGCGUUCAGC..AGGGCcgccaccc................CGUUUgca........................gggagggcgGCCG...-GC.GGGUCAUUGCUCUUGAA GGCGAGAGUAGAAGCGUUCAGC..AGGGCcgcca.cccgg.............UUUG-.........................ccgggagggugGCCG...-GC.GGGUCAUUGCUCUUGAA GUCGAGAGUAGAAGCGUUCACC..GCACUggug.....cggcgcg.gcagcccAGAUGc...........gggcugcgcgcaccggaaucgaccGCCG...CGGcCGGAAAUUGCUCUCGGA CUGCAGAGUAGAAGCGUUCAGC..GACGGc.......................CGUCCcaucgccu...........................gCCGU...CGCcCGGAAAUUGCUCGAGUC