Rfam: Seed sequence alignment for RF03054

URS0000D66ABA_1086014/1-54 Acinetobacter pittii D499 0.0 URS0000D67557_981332/1-54 Acinetobacter pittii DSM 9306 0.0 URS0000D67557_1217673/1-54 Acinetobacter pittii ANC 3678 0.0 URS0000D67557_1217688/1-54 Acinetobacter sp. NIPH 542 0.0 URS0000D67557_1311774/1-54 Acinetobacter pittii ATCC 19004 = CIP 70.29 0.0 URS0000D66C0B_1217706/1-54 Acinetobacter sp. NIPH 2168 0.0 URS0000D66C0B_12908/1-54 unclassified sequences 0.0 URS0000D66C0B_1217712/1-54 Acinetobacter sp. NIPH 758 0.0 URS0000D6AD4F_40373/1-53 Acinetobacter sp. CIP-A165 0.0 URS0000D6AD4F_1217692/1-53 Acinetobacter sp. NIPH 298 0.0 URS0000D69699_1217716/1-53 Acinetobacter ursingii NIPH 706 0.0 URS0000D69699_981336/1-53 Acinetobacter ursingii DSM 16037 = CIP 107286 0.0 URS0000D683F2_1217676/1-53 Acinetobacter soli CIP 110264 0.0 URS0000D683F2_1217677/1-53 Acinetobacter soli NIPH 2899 0.0 URS0000D67CD1_1071390/1-52 Acinetobacter sp. NBRC 100985 0.0 URS0000D66D6D_525244/1-52 Acinetobacter sp. ATCC 27244 0.0 URS0000D66D6D_1217659/1-52 Acinetobacter haemolyticus CIP 64.3 0.0 URS0000D67A57_1397525/1-52 Acinetobacter sp. COS3 0.0 URS0000D67A57_1191460/1-52 Acinetobacter venetianus RAG-1 = CIP 110063 0.0 URS0000D69824_1217648/1-52 Acinetobacter beijerinckii CIP 110307 0.0 URS0000D69824_1217649/1-52 Acinetobacter beijerinckii ANC 3835 0.0 URS0000D6CDC1_1265504/1-76 Curvibacter lanceolatus ATCC 14669 0.0 URS0000D66CFE_266265/1-67 Burkholderia xenovorans LB400 0.0 URS0000D659F7_243261/1-67 Burkholderia sp. Ch1-1 0.0 URS0000D6A932_1246301/1-89 Variovorax paradoxus B4 0.0 URS0000D695F6_396598/1-65 Burkholderia graminis C4D1M 0.0 URS0000D6B3EB_12908/1-71 unclassified sequences 0.0 URS0000D69FF9_1188252/1-56 Vibrio rumoiensis 1S-45 0.0 URS0000D6C176_675811/1-54 Vibrio furnissii CIP 102972 0.0 URS0000D6C176_903510/1-54 Vibrio furnissii NCTC 11218 0.0

UUCCUGAGUAUAAGCGGUCAGU..GUGU-........................GGUAA....................................-ACA...UGC.GGGACAUUGCUCUACAG UUCCUGAGUAUAAGCGGUCAGU..GUGU-........................AGUAA....................................-ACA...UGC.GGGACAUUGCUCUACAG UUCCUGAGUAUAAGCGGUCAGU..GUGU-........................AGUAA....................................-ACA...UGC.GGGACAUUGCUCUACAG UUCCUGAGUAUAAGCGGUCAGU..GUGU-........................AGUAA....................................-ACA...UGC.GGGACAUUGCUCUACAG UUCCUGAGUAUAAGCGGUCAGU..GUGU-........................AGUAA....................................-ACA...UGC.GGGACAUUGCUCUACAG UUACUGAGUAUAAGCGGUCAGU..GUGU-........................ACCAA....................................-ACA...CGC.GGGACAUUGCUCUACAG UUACUGAGUAUAAGCGGUCAGU..GUGU-........................ACCAA....................................-ACA...CGC.GGGACAUUGCUCUACAG UUACUGAGUAUAAGCGGUCAGU..GUGU-........................ACCAA....................................-ACA...CGC.GGGACAUUGCUCUACAG UUACUGAGUAUAAGCGGUCAGU..GUGU-........................ACUU-....................................-UCA...CAC.GGGACAUUGCUCUACAG UUACUGAGUAUAAGCGGUCAGU..GUGU-........................ACUU-....................................-UCA...CAC.GGGACAUUGCUCUACAG UAACUGAGUAUAAGCGGUUAGU..GCGU-........................UCAG-....................................-UCG...CAU.GGGACAUUGCUCUACAG UAACUGAGUAUAAGCGGUUAGU..GCGU-........................UCAG-....................................-UCG...CAU.GGGACAUUGCUCUACAG AACCUGAGUAUAAGCGGUUAGU..GCGA-........................UCAU-....................................-UCG...CAU.GGGACAUUGCUCUACAG AACCUGAGUAUAAGCGGUUAGU..GCGA-........................UCAU-....................................-UCG...CAU.GGGACAUUGCUCUACAG UAAGUGAGUAUAAGCGGUUAGU..GUGU-........................AUU--....................................-ACA...CAU.GGGACAUUGCUCUGCAG UAACUGAGUAUAAGCGGUUAGU..GUGU-........................AUU--....................................-ACA...CAU.GGGACAUUGCUCUACAG UAACUGAGUAUAAGCGGUUAGU..GUGU-........................AUU--....................................-ACA...CAU.GGGACAUUGCUCUACAG UAAGUGAGUAUAAGCGGUUAGU..GUGU-........................AUU--....................................-ACA...CAU.GGGACAUUGCUCUACAG UAAGUGAGUAUAAGCGGUUAGU..GUGU-........................AUU--....................................-ACA...CAU.GGGACAUUGCUCUACAG UAACUGAGUAUAAGCGGUUAGU..GUGU-........................AAA--....................................-ACA...CAU.GGGACAUUGCUCUACAG UAACUGAGUAUAAGCGGUUAGU..GUGU-........................AAA--....................................-ACA...CAU.GGGACAUUGCUCUACAG GGCAAGAGUAGAAGCGUUCAG-..-CUGCccu..guccggc............CGGUGu.......................gccgggccugggGCAGa..--C.CGGGAAUUGCUCUUGAG AAUCAGAGUAGAAGCGGCUAGC..GAGCCggcau...................AUCC-...............................augccGGUCac.CGU.GGGGCAUUGCUCUUGGG AAACAGAGUAGAAGCGGCUAGC..GAGCCggcau...................GUCC-...............................augccGGUCac.CGU.GGGGCAUUGCUCUUGGG CCACGGAGUAGAAGCGUUCACCguUUCGCcgugaagacgc.ccg.........AUGA-.....................cggugcggcuucuccGCGCuu.CGGcCGGAAAUUGCUCUGGAG GUGCGGAGUAUAAGCGGCUAGC..GCCGG.gcga...................ACGGU...............................ucgcuUCGG...CGU.GGGGCAUUGCUCCUGGG UUCGAGAGUAGAAGCGUUCAGC..GCAAUcgu.ccggc...............AGCU-...........................gccggugcgGUUG...-GC.GGGUCAUUGCUCUUGAA AACAGGAGUAGAAGCGGUCUGU..AAUG-........................GAAAUag..................................-CAU...UAC.UGGGCAUUGCUCCAAUA CCCCGGAGUAGAAGCGGUCUGC..AAUC-........................UCGAU....................................-GAU...UGC.UGGACAUUGCUCCAAUC CCCCGGAGUAGAAGCGGUCUGC..AAUC-........................UCGAU....................................-GAU...UGC.UGGACAUUGCUCCAAUC