Rfam: Seed sequence alignment for RF03054

URS0000D66E59_1116375/1-51 Vibrio sp. EJY3 0.0 URS0000D6AD5C_1336752/1-49 Vibrio fluvialis PG41 0.0 URS0000D6D17D_1336753/1-49 Vibrio fluvialis I21563 0.0 URS0000D6C012_12908/1-54 unclassified sequences 0.0 URS0000D6AB32_1144317/1-70 Acidovorax sp. CF316 0.0 URS0000D6BA63_12908/1-69 unclassified sequences 0.0 URS0000D68E00_12908/1-69 unclassified sequences 0.0 URS0000D6AEF5_1009852/1-59 Comamonas testosteroni ATCC 11996 0.0 URS0000D6C631_399795/1-59 Comamonas testosteroni KF-1 0.0 URS0000D6C631_12908/1-59 unclassified sequences 0.0 URS0000D673D8_12908/1-59 unclassified sequences 0.0 URS0000D6CB71_12908/1-59 unclassified sequences 0.0 URS0000D6CB71_563045/1-59 Comamonas testosteroni S44 0.0 URS0000D68E1B_1161913/1-64 Herbaspirillum lusitanum P6-12 0.0 URS0000D6CFF9_1144319/1-64 Herbaspirillum sp. CF444 0.0 URS0000D6AB9A_757424/1-69 Herbaspirillum seropedicae SmR1 0.0 URS0000D6644E_1175306/1-69 Herbaspirillum sp. GW103 0.0 URS0000D685EC_12908/1-69 unclassified sequences 0.0 URS0000D67767_12908/1-69 unclassified sequences 0.0 URS0000D6803A_1234777/1-70 Herbaspirillum rubrisubalbicans Os45 0.0 URS0000D6AC36_675811/1-50 Vibrio furnissii CIP 102972 0.0 URS0000D6AC36_903510/1-50 Vibrio furnissii NCTC 11218 0.0 URS00023119C1_137716/1-45 Ideonella sp. B508-1 0.0

UAGUUGAGUAGAAGCGGUUAAG..AG---........................UUGAAu...................................---C...UCU.GGGACAUUGCUCAAAGG AUGAUGAGUAGAAGCGGUCAGG..GG---........................AGAU-....................................---C...UCC.GGGACAUUGCUCAUAGA AUGAUGAGUAGAAGCGGUCAGG..GG---........................UUAU-....................................---C...UCC.GGGACAUUGCUCAUAGA AAGAAGAGUAGAAGCGGUCAGG..AAGC-........................GUUCA....................................-GUU...UCC.GGGACAUUGCUCUUGGG CUGCCGAGUAGAAGCGUUCAGC..GCUGCca......................CCUUUcuucgcugu.........................ugGUGG...CGCcCGGAAAUUGCUCAGUUC UGCACGAGUAGAAGCGUUCAGC..AGUGCccccag..................CCUGGc.............................cggcggGCAC...GGC.CGGAAAUUGCUCAGCGU UGCACGAGUAGAAGCGUUCAGC..AGUGCccccag..................CUUGGc.............................cggcggGCAC...GGC.CGGAAAUUGCUCAGCGU UGAACGAGUAGAAGCGUUCAGC..-CUGC........................CUCUGugu.................................GCAG...UGCcCGGAAAUUGCUCAAGUC UGAACGAGUAGAAGCGUUCAGC..-CUGCau......................CCGU-..................................guGCAG...UGCcAGGAAAUUGCUCAAGUC UGAACGAGUAGAAGCGUUCAGC..-CUGCau......................CCGU-..................................guGCAG...UGCcAGGAAAUUGCUCAAGUC UGAACGAGUAGAAGCGUUCAGC..-CUGUau......................CCGC-..................................guGCAG...UGCcCGGAAAUUGCUCAAGUC UGAACGAGUAGAAGCGUUCAGC..-CUGCau......................CCGC-..................................guGCAG...UGCcCGGAAAUUGCUCAAGUC UGAACGAGUAGAAGCGUUCAGC..-CUGCau......................CCGC-..................................guGCAG...UGCcCGGAAAUUGCUCAAGUC AGAUUGAGUAGAAGCGGCUAGC..CGUCGau......................CCAAAuacc..............................auCGAC...UGU.GGGGCAUUGCUCGUGAC AAGCUGAGUAGAAGCGGCUAGC..CGUCGau......................CCAAAuacc..............................auCGAC...UGU.GGGGCAUUGCUCGUGAC CCAGUGAGUAGAAGCGGCUAGC..AGUCGguaa....................CGAAGacac............................uuacCUUCu..UGC.GGGGCAUUGCUCGUGAC GCAGUGAGUAGAAGCGGCUAGC..AGUCGguaa....................CGAAUccac............................uuacCUUCu..UGC.GGGGCAUUGCUCGUGAC CGGUUGAGUAGAAGCGGCUAGC..AGUCGguaa....................CGAAGacac............................uuacCUUCu..UGC.GGGGCAUUGCUCGUGAC CGAUUGAGUAGAAGCGGCUAGC..AGUCGguaa....................CCAAGacac............................uuacCUUCu..CGC.GGGGCAUUGCUCGUGAC AGCUUGAGUAGAAGCGGCUAGC..AGUCGguaa....................CACUUcacac...........................uuacCGUCu..UGC.GGGGCAUUGCUCGUGAC GAUGUGAGUAGAAGCGGUCAGG..AG---........................GAACG....................................---C...UCC.GGGGCAUUGCUCAUGAG GAUGUGAGUAGAAGCGGUCAGG..AG---........................GAACG....................................---C...UCC.GGGGCAUUGCUCAUGAG -----GAGUAGAAGCGUUCAGC..GGCC-........................GAAA-....................................-GGC...CGCcCGGAAAUUGCUCC----