Rfam: Seed sequence alignment for RF03054

URS0000D6729D_1333856/1-61 Pseudomonas stutzeri MF28 0.0 URS0000D6B11C_12908/1-52 unclassified sequences 0.0 URS0000D6A1AA_69328/1-54 Pseudomonas sp. VLB120 0.0 URS0000D6BD60_12908/1-53 unclassified sequences 0.0 URS0000D6A0CC_1395516/1-53 Pseudomonas moraviensis R28-S 0.0 URS0000D6CE6D_390235/1-53 Pseudomonas putida W619 0.0 URS0000D67C2F_1079364/1-53 Pseudomonas putida str. Idaho 0.0 URS0000D67C2F_1196325/1-53 Pseudomonas putida DOT-T1E 0.0 URS0000D67C2F_1081940/1-53 Pseudomonas putida B6-2 0.0 URS0000D67C2F_12908/1-53 unclassified sequences 0.0 URS0000D69EA1_1215087/1-53 Pseudomonas putida S12 0.0 URS0000D69EA1_931281/1-53 Pseudomonas putida BIRD-1 0.0 URS0000D67EF1_12908/1-53 unclassified sequences 0.0 URS0000D67EF1_390235/1-53 Pseudomonas putida W619 0.0 URS0000D692AE_1079364/1-54 Pseudomonas putida str. Idaho 0.0 URS0000D6745D_1196325/1-54 Pseudomonas putida DOT-T1E 0.0 URS0000D6745D_1081940/1-54 Pseudomonas putida B6-2 0.0 URS0000D6745D_1193146/1-54 Pseudomonas putida LS46 0.0 URS0000D6745D_1227924/1-54 Pseudomonas putida TRO1 0.0 URS0000D68A25_1215087/1-54 Pseudomonas putida S12 0.0 URS0000D68A25_931281/1-54 Pseudomonas putida BIRD-1 0.0 URS0000D68A25_12908/1-54 unclassified sequences 0.0 URS0000D68F01_69328/1-54 Pseudomonas sp. VLB120 0.0 URS0000D6CB83_903510/1-54 Vibrio furnissii NCTC 11218 0.0 URS0000D6CB83_675811/1-54 Vibrio furnissii CIP 102972 0.0 URS0000D6794A_1336753/1-53 Vibrio fluvialis I21563 0.0 URS0000D6794A_1336752/1-53 Vibrio fluvialis PG41 0.0 URS0000D685CF_1219067/1-58 Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 0.0 URS0000D685CF_1116375/1-58 Vibrio sp. EJY3 0.0 URS0000D66E59_1219067/1-51 Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 0.0

UCUUCGAGUAGAAGCGGUUAGC..GCCAGcgg.....................GUUU-.................................ccgGUGG...CGU.GGGACAUUGCUCUUGCG CUUUCGAGUAGAAGCGGUCAGU..GCCG-........................AAA--....................................-UGG...GAU.GGGGCAUUGCUCAGGCA CGGUCGAGUAGAAGCGGUCAGU..GCCG-........................GUGGA....................................-CGG...CAU.GGGGCAUUGCUCUUGCG CUGGCGAGUAGAAGCGGUUAGU..GCCA-........................GCGA-....................................-UGG...CAU.AGGACAUUGCUCUUGCG CUUUCGAGUAGAAGCGGUCAGU..GCCA-........................GCAA-....................................-UGG...CAC.CGGGCAUUGCUCUUGCG CCUUCGAGUAGAAGCGGUCAGU..GCCA-........................GAAA-....................................-UGG...CAU.GGGGCAUUGCUCUUGCG UCAGCGAGUAGAAGCGGUCAGU..GCCA-........................GGCA-....................................-UGG...CAU.GGGGCAUUGCUCUUGCG UCAGCGAGUAGAAGCGGUCAGU..GCCA-........................GGCA-....................................-UGG...CAU.GGGGCAUUGCUCUUGCG UCAGCGAGUAGAAGCGGUCAGU..GCCA-........................GGCA-....................................-UGG...CAU.GGGGCAUUGCUCUUGCG UCAGCGAGUAGAAGCGGUCAGU..GCCA-........................GGCA-....................................-UGG...CAU.GGGGCAUUGCUCUUGCG CCUGCGAGUAGAAGCGGUCAGU..GCCA-........................GGCA-....................................-UGG...CAU.GGGGCAUUGCUCUUGCG CCUGCGAGUAGAAGCGGUCAGU..GCCA-........................GGCA-....................................-UGG...CAU.GGGGCAUUGCUCUUGCG CAGUCGAGUAGAAGCGGUCAGU..GCCA-........................GAAA-....................................-UGG...CAU.GGGACAUUGCUCUGGCG CAGUCGAGUAGAAGCGGUCAGU..GCCA-........................GAAA-....................................-UGG...CAU.GGGACAUUGCUCUGGCG AACUCGAGUAGAAGCGGUCAGU..GCC--........................UAAAGau..................................--GG...CAU.GGGACAUUGCUCUGGCG AACUCGAGUAGAAGCGGUCAGU..GCCAA........................AAG--....................................UUGG...CAU.GGGACAUUGCUCUGGCG AACUCGAGUAGAAGCGGUCAGU..GCCAA........................AAG--....................................UUGG...CAU.GGGACAUUGCUCUGGCG AACUCGAGUAGAAGCGGUCAGU..GCCAA........................AAG--....................................UUGG...CAU.GGGACAUUGCUCUGGCG AACUCGAGUAGAAGCGGUCAGU..GCCAA........................AAG--....................................UUGG...CAU.GGGACAUUGCUCUGGCG AACUCGAGUAGAAGCGGUCAGU..GCCCA........................AAGA-....................................UGG-...CAU.GGGACAUUGCUCUGGCG AACUCGAGUAGAAGCGGUCAGU..GCCCA........................AAGA-....................................UGG-...CAU.GGGACAUUGCUCUGGCG AACUCGAGUAGAAGCGGUCAGU..GCCCA........................AAGA-....................................UGG-...CAU.GGGACAUUGCUCUGGCG CAUGGGAGUAGAAGCGGUCAGU..GCCUG........................GAAA-....................................U-GG...CAU.GGGACAUUGCUCUGGCG UUCGUGAGUAGAAGCGGUUAGA..UGUC-........................GUGAU....................................-GGC...AUC.GGGACAUUGCUCAUAGU UUCGUGAGUAGAAGCGGUUAGA..UGUC-........................GUGAU....................................-GGC...AUC.GGGACAUUGCUCAUAGU UUCGUGAGUAGAAGCGGUUAGG..UGCC-........................GGGC-....................................-GGC...AUC.GGGACAUUGCUCAUAGU UUCGUGAGUAGAAGCGGUUAGG..UGCC-........................GGGC-....................................-GGC...AUC.GGGACAUUGCUCAUAGU AGCGUGAGUAGAAGCGGUUAGA..UACCU........................AAACAua..................................AGGU...GUC.GGGACAUUGCUCAUAGU AGCGUGAGUAGAAGCGGUUAGA..UACCU........................AAACAua..................................AGGU...GUC.GGGACAUUGCUCAUAGU UAGUUGAGUAGAAGCGGUUAAG..AG---........................UUGAAu...................................---C...UCU.GGGACAUUGCUCAAAGG