Rfam: Seed sequence alignment for RF03054

URS0000D6C803_592316/1-56 Pantoea sp. At-9b 0.0 URS0000D688D3_1144320/1-55 Pantoea sp. GM01 0.0 URS0000D6AB98_1144341/1-55 Pantoea sp. YR343 0.0 URS0000D66F3C_1121862/1-48 Endozoicomonas elysicola DSM 22380 0.0 URS0000D699ED_1169143/1-60 Paraburkholderia bryophila 376MFSha3.1 0.0 URS0000D671FF_12908/1-72 unclassified sequences 0.0 URS0000D6B60D_1395516/1-69 Pseudomonas moraviensis R28-S 0.0 URS0000D682AB_12908/1-67 unclassified sequences 0.0 URS0000D6847B_12908/1-66 unclassified sequences 0.0 URS0000D66ECB_12908/1-59 unclassified sequences 0.0 URS0000D67028_1144320/1-57 Pantoea sp. GM01 0.0 URS0000D6CEAF_1144341/1-57 Pantoea sp. YR343 0.0 URS0000D69DEE_1120924/1-53 Acinetobacter baylyi DSM 14961 = CIP 107474 0.0 URS0000D6A35C_12908/1-57 unclassified sequences 0.0 URS0000D6C95F_1217699/1-54 Acinetobacter sp. CIP 110321 0.0 URS0000D66196_280145/1-54 Acinetobacter genomosp. 14TU 0.0 URS0000D66196_1217700/1-54 Acinetobacter sp. CIP 70.18 0.0 URS0000D66196_1217694/1-54 Acinetobacter sp. CIP 64.2 0.0 URS0000D66196_1217701/1-54 Acinetobacter sp. ANC 3880 0.0 URS0000D66196_1330039/1-54 Acinetobacter gyllenbergii MTCC 11365 0.0 URS0000D66196_1144672/1-54 Acinetobacter sp. CIP 56.2 0.0 URS0000D6B0D8_1217713/1-54 Acinetobacter sp. NIPH 809 0.0 URS0000D68CB6_903918/1-54 Acinetobacter sp. WC-323 0.0 URS0000D68CB6_1217697/1-54 Acinetobacter sp. NIPH 1847 0.0 URS0000D68D4C_1217698/1-52 Acinetobacter sp. NIPH 3623 0.0 URS0000D66F2E_1217708/1-54 Acinetobacter sp. NIPH 2100 0.0 URS0000D66F2E_1217703/1-54 Acinetobacter sp. ANC 4105 0.0 URS0000D66F2E_1217702/1-54 Acinetobacter sp. NIPH 1867 0.0 URS0000D6850C_1217707/1-54 Acinetobacter sp. ANC 3929 0.0 URS0000D66ABA_1221309/1-54 Acinetobacter pittii TG6411 0.0

AAAAUGAGUAGAAGCUGUCAGC..CGCG-........................GUCAUua..................................-CCC...GGU.AGGUCAUUGCUCGAUCG AAAGUGAGUAGAAGCUGUCAGC..CGUG-........................GUUU-....................................-CAUuc.GGU.GGGUCAUUGCUCGAUCG AAAAUGAGUAGAAGCUGUCAAC..CGUG-........................GUUU-....................................-CACcc.GGU.GGGUCAUUGCUCGAUCG GCAUUGAGUAGAAGCUGUCAAG..GC---........................GUC--....................................---G...CCU.GGGUCAUUGCUCAACGC UUGCAGAGUAUAAGCGGCUAGC..GUCG-gcg.....................UAUC-.................................ugaCCGG...CGU.GGGGCAUUGCUCUUGGG CAGUCGAGUAGAAGCGGUCAGC..ACUGAacggguccg...............ACAC-...........................cggacacc.UCAG...CGC.AGGGCAUUGCUCUGGCG GAAUCGAGUAGAAGCGGUCAGC..ACAG-.agggcucu...............CAAC-...........................agaacccg.-AGG...UGC.AGGGCAUUGCUCUGGCG UUGCAGAGUAGAAGCGGCUAGU..GUCUGgu......................GUCUUcguuuuca..........................acCAG-...CAU.GGGGCAUUGCUCUUGGG GGCCAGAGUAGAAGCGUUCAAC..CCCGUg.......................CAAUGcguugcga...........................uGCGG...GGU.GGGAAAUUGCUCUUGAG CCGCAGAGUAUAAGCGGUCAGC..GUGA-........................CGAGGuu..................................-UCAccaCGC.GGGACAUUGCUCUGCAG UAACUGAGUAUAAGCGGUCAGC..GUGA-........................CAUCAgau.................................-UCA...CGC.AGGACAUUGCUCUACAG CCGUUGAGUAUAAGCGGUCAGC..GUGA-........................CAGCAgau.................................-UCA...CGC.AGGACAUUGCUCUACAG UAAUUGAGUAUAAGCGGUUAGU..GCG--........................UGCAUu...................................--CG...CAU.GGGACAUUGCUCUACAG CUACUGAGUAUAAGCGGUCAGC..GUGAC........................ACCAGau..................................-UCA...CGC.AGGACAUUGCUCUACAG UAAUUGAGUAAAAGCGGUCAGU..AUGUU........................GUG--....................................AACA...UAC.GGGACAUUGCUCUACAG UGAUUGAGUAUAAGCGGUCAGU..AUGUU........................GCA--....................................AACA...UAC.GGGACAUUGCUCUACAG UGAUUGAGUAUAAGCGGUCAGU..AUGUU........................GCA--....................................AACA...UAC.GGGACAUUGCUCUACAG UGAUUGAGUAUAAGCGGUCAGU..AUGUU........................GCA--....................................AACA...UAC.GGGACAUUGCUCUACAG UGAUUGAGUAUAAGCGGUCAGU..AUGUU........................GCA--....................................AACA...UAC.GGGACAUUGCUCUACAG UGAUUGAGUAUAAGCGGUCAGU..AUGUU........................GCA--....................................AACA...UAC.GGGACAUUGCUCUACAG UGAUUGAGUAUAAGCGGUCAGU..AUGUU........................GCA--....................................AACA...UAC.GGGACAUUGCUCUACAG UGAUUGAGUAUAAGCGGUCAGU..AUGUU........................GCA--....................................AACA...UAC.GGGACAUUGCUCUGCAG UGAUUGAGUAUAAGCGGUCAGU..AUGUU........................GUG--....................................AACA...UAC.GGGACAUUGCUCUACAG UGAUUGAGUAUAAGCGGUCAGU..AUGUU........................GUG--....................................AACA...UAC.GGGACAUUGCUCUACAG UGAUUGAGUAUAAGCGGUCAGU..AUG--........................GCAAA....................................--CA...UAC.GGGACAUUGCUCUACAG UUACUGAGUAUAAGCGGUCAGU..GUGUU........................GUG--....................................AACA...CAC.GGGACAUUGCUCUACAG UUACUGAGUAUAAGCGGUCAGU..GUGUU........................GUG--....................................AACA...CAC.GGGACAUUGCUCUACAG UUACUGAGUAUAAGCGGUCAGU..GUGUU........................GUG--....................................AACA...CAC.GGGACAUUGCUCUACAG UUACUGAGUAUAAGCGGUCAGU..GUGUU........................GCA--....................................AACA...UAC.GGGACAUUGCUCUACAG UUCCUGAGUAUAAGCGGUCAGU..GUGU-........................GGUAA....................................-ACA...UGC.GGGACAUUGCUCUACAG