Rfam: Seed sequence alignment for RF03054

URS0000D6989B_400668/1-68 Marinomonas sp. MWYL1 0.0 URS0000D65B15_12908/1-60 unclassified sequences 0.0 URS0000D68EF9_366394/1-70 Sinorhizobium medicae WSM419 0.0 URS0000D68EF9_1041149/1-70 Sinorhizobium medicae WSM1369 0.0 URS0000D68BF6_1194718/1-70 Sinorhizobium meliloti C0438LL 0.0 URS0000D68BF6_1194708/1-70 Sinorhizobium meliloti A0641M 0.0 URS0000D68BF6_693982/1-70 Sinorhizobium meliloti AK83 0.0 URS0000D68BF6_1107881/1-70 Sinorhizobium meliloti CCNWSX0020 0.0 URS0000D68BF6_698936/1-70 Sinorhizobium meliloti BL225C 0.0 URS0000D68BF6_1286640/1-70 Sinorhizobium meliloti 2011 0.0 URS0000D6C01E_1041151/1-70 Sinorhizobium meliloti 4H41 0.0 URS0000D689F1_12908/1-70 unclassified sequences 0.0 URS0000D674B5_12908/1-70 unclassified sequences 0.0 URS0000D68B37_400668/1-61 Marinomonas sp. MWYL1 0.0 URS0000D68905_400668/1-49 Marinomonas sp. MWYL1 0.0 URS0000D669E6_12908/1-77 unclassified sequences 0.0 URS0000D6CF64_1120924/1-60 Acinetobacter baylyi DSM 14961 = CIP 107474 0.0 URS0000D6970A_12908/1-56 unclassified sequences 0.0 URS0000D6A551_626887/1-70 Marinobacter sp. D15-8W 0.0 URS0000D68663_12908/1-62 unclassified sequences 0.0 URS0000D67560_12908/1-71 unclassified sequences 0.0 URS0000D684D3_12908/1-60 unclassified sequences 0.0 URS0000D66BDD_864073/1-69 Herbaspirillum frisingense GSF30 0.0 URS0000D660A4_12908/1-54 unclassified sequences 0.0 URS0000D659AA_12908/1-54 unclassified sequences 0.0 URS0000D69C19_1217677/1-58 Acinetobacter soli NIPH 2899 0.0 URS0000D68EDB_1217676/1-58 Acinetobacter soli CIP 110264 0.0 URS0000D67DCE_1217716/1-60 Acinetobacter ursingii NIPH 706 0.0 URS0000D69C03_1257043/1-60 Acinetobacter ursingii ANC 3649 0.0 URS0000D69C03_981336/1-60 Acinetobacter ursingii DSM 16037 = CIP 107286 0.0

GCAAUGAGUAGAAGCGGUCAAA..UUUGGugu.....................CGAGUuccaac...........................aaaCCAA...AUU.CGGGCAUUGCUCACUGC CCAUUGGGUAGAAGCGUUCAAU..CAGCAcc......................GUGAC..................................ggUGCA...GAU.GGGAAAUUGCCCAUGAU CACGUCAGUAGAAGCGGUCAGC..CGC--guuaguauc...............UAAC-...........................gauac.aacAUCC...GGU.CGGGAAUUGCUGGCAUG CACGUCAGUAGAAGCGGUCAGC..CGC--guuaguauc...............UAAC-...........................gauac.aacAUCC...GGU.CGGGAAUUGCUGGCAUG CACGUCAGUAGAAGCGGUCAGC..CGC--guuaguauc...............UCAC-...........................gauac.aacAUCC...GGU.CGGGAAUUGCUGACAUG CACGUCAGUAGAAGCGGUCAGC..CGC--guuaguauc...............UCAC-...........................gauac.aacAUCC...GGU.CGGGAAUUGCUGACAUG CACGUCAGUAGAAGCGGUCAGC..CGC--guuaguauc...............UCAC-...........................gauac.aacAUCC...GGU.CGGGAAUUGCUGACAUG CACGUCAGUAGAAGCGGUCAGC..CGC--guuaguauc...............UCAC-...........................gauac.aacAUCC...GGU.CGGGAAUUGCUGACAUG CACGUCAGUAGAAGCGGUCAGC..CGC--guuaguauc...............UCAC-...........................gauac.aacAUCC...GGU.CGGGAAUUGCUGACAUG CACGUCAGUAGAAGCGGUCAGC..CGC--guuaguauc...............UCAC-...........................gauac.aacAUCC...GGU.CGGGAAUUGCUGACAUG CACGUCAGUAGAAGCGGUCAGC..CGC--guuaguauc...............UCAC-...........................gauac.aacAUCC...GGU.CGGGAAUUGCUGGCAUG UGCAAGAGAAGAAGCGUUCAAC..CAAGCcgugac..................AGGCAa.............................gucaggGCUUc..GGC.GGGAAAUUGCUCUUACC AGAACGAGUAUAAGCGUUCAAC..AUUCAgaugau..................GUCUUgg............................aucauuUGAA...UGU.GGGUCAUUGCUCCAUUG AACCGGAGUAGAAGCAGUCAGA..UGUUUuu......................CAGA-..................................agAAAUgc.AUC.AGGUCAUUGCUCCAUUU AUAAAGAGUAGAAGCGGUUAAG..CC---........................UUGC-....................................---G...GCC.UGGACAUUGCUCUUUCC GGCGUGAGUAGAAGCGGUCAGC..CGGGCcgc......cuc............CGAUAacgu....................gagguaacugc.GCUC...GGU.CGGAAAUUGCUCACCUU UAUGAGAGUAGAAGCUGUCAAC..AUGAUg.......................ACGU-...................................uGUCAcuaUGU.GGGUCAUUGCUCUAGGU AUUCUGAGUAUAAGCAGUCAGC..GGAUC........................GCUCC....................................GAUC...CGC.GGGUCAUUGCUCCGGCC UGACUGAGUAGAAGCAGUCAGG..UCCGGucucugcc................UGUU-............................ggcgaac.CCGG...AUC.GGGUCAUUGCUCAUCGC UCAUCGAGUAGAAGCCGGCAAC..GGCGUgccu....................UCUC-................................aggc-CGC...CGU.GGGUCAUUGCUCCGGGA CGCAAGAGUAGAAGCGUUCAAC..CGGC-ccacagac................AGACAa...........................guca.uggCGCA...GGU.GGGAAAUUGCUCUUGUU AGUCUGAGUAGAAGCAGUCAGG..AAUCGc.......................CAGACac.................................gCGAC...UUC.GGGUCAUUGCUCAGUCG GGAUUGAGUAGAAGCGGCUAGC..GG-UCgguag...................AACGGacac...........................uuaccUUCC...UGC.GGGGCAUUGCUCGUGAU UCCCUGAGUAGAAGCUGUCAGC..CGGA-........................AAGCC....................................-UCC...GGU.GGGUCAUUGCUCCCUUG UCCCUGAGUAGAAGCUGUCAGC..CGGAG........................AGC--....................................CUCC...GGU.GGGUCAUUGCUCCCUUG AUUGAGAGUAGAAGCUGUCAAC..AUAU-........................AAAAAacga................................-GUA...UGU.GGGUCAUUGCUCUAAGC AUUGAGAGUAGAAGCUGUCAAC..AUAU-........................AAAAAauga................................-GUA...UGU.GGGUCAUUGCUCUAAGC GAAUAGAGUAUAAGCUGUCAAC..AUAUUga......................UUUAU..................................uuAUUA...UGU.GGGUCAUUGCUCUAAGC GAUUAGAGUAUAAGCUGUCAAC..AUAUU.......ga...............UUUAU...........................uc.......AUUA...UGU.GGGUCAUUGCUCUAAGC GAUUAGAGUAUAAGCUGUCAAC..AUAUU.......ga...............UUUAU...........................uc.......AUUA...UGU.GGGUCAUUGCUCUAAGC