Rfam: Seed sequence alignment for RF01701

CP001291.1/1097567-1097639 Cyanothece sp. PCC 7424 53.8 CP000435.1/997952-998016 Synechococcus sp. CC9311 59 BA000039.2/1092076-1092149 Thermosynechococcus elongatus BP-1 48.3 CP000435.1/1490305-1490241 Synechococcus sp. CC9311 59 BA000022.2/1558977-1558901 Synechocystis sp. PCC 6803 53.4 CP000435.1/772842-772778 Synechococcus sp. CC9311 59 CP000576.1/949300-949233 Prochlorococcus marinus str. MIT 9301 74.1 BA000022.2/3398354-3398286 Synechocystis sp. PCC 6803 53.4

UGUGGUGUG.AGGAAA.aagu.........AGAGAAA..CGU.UUGGG..GUCGAAACACGGACAGAC.UCCCGAACGUUUUUCUCAUUU UCACUUGUG.AGGAGG..............GCUUC-U..UC-.GCGGA..GUGGAAACUAGGCAACAC.GCCCAACGA--GAAGCCGAGA GACUUAGUG.AGGAGU.gauucgcaaac..AAAAGUC..CU-.--AGG..GUCGAAACACGGCAAGAC.UCCU---AGGGCUUUUUAUUU AACUUUGUG.AGGAGA..............GCUUC--..UUC.UUGAA..AUGGAAACGAGGCGACAC.GUCCUAAAA--GAAGCCGAGA UUGUGUGUG.AGGAGU.aa...gauuaauaAGGAAGCagCC-.GGAGG..GUCGAAACAUGGCAAGAC.UCCUUGCGGACUUCCUUA--- UCAUUUGUG.AGGAAG..............GCUUC-U..UC-.ACGGA..GUGGAAACUAGGCAACAC.GCCCAACGA--GAAGCCGAGA UUGUGUGU-.AGGAGG..............AAUUGAU..UUA.UUUCA..GUGGAAACAAGGUAACAC.UUGAUGUAAAUUAAUUUUAAA ACAGGUGUG.AGGAAA.uuaga........AAAACAU..CU-.--GGA..GUCGAAACAAGGAAAGAC.GCCCC--AGGUGUUUUUUUAU