Rfam: Seed sequence alignment for RF01051

CP000606.1/1879203-1879288 Shewanella loihica PV-4 65.8 AY855346.1/29246-29151 Clostridium phage phi CD119 73.2 CP000116.1/532900-532975 Thiobacillus denitrificans ATCC 25259 66.3 CP000148.1/824437-824354 Geobacter metallireducens GS-15 68.8 AE016877.1/408156-408240 Bacillus cereus ATCC 14579 74.8 AL954747.1/1707540-1707622 Nitrosomonas europaea ATCC 19718 60.2 CP000302.1/2534228-2534317 Shewanella denitrificans OS217 65.6 CP000284.1/503076-502984 Methylobacillus flagellatus KT 63.9 AE015927.1/477013-477088 Clostridium tetani E88 67.3 AP006840.1/3227495-3227385 Symbiobacterium thermophilum IAM 14863 65 CP000282.1/989437-989348 Saccharophagus degradans 2-40 63.3 CP000267.1/4400341-4400428 Rhodoferax ferrireducens T118 56.9 BA000004.3/597582-597667 Bacillus halodurans C-125 52.5 CP000112.1/841128-841197 Desulfovibrio alaskensis G20 45.8 CP000251.1/2466924-2466841 Anaeromyxobacter dehalogenans 2CP-C 38.9

CUCUCGAAACGGCAAGCAUU.A.A.GUA...A.UUAAUGUACGCAAAGCCA..C.AGGCCCU.AAUUGC...AUA-.................................GC.AAAAGGGUGGCUG.GGUUACCGAA AAACUAAAUCGGCAAAACUA.G.A.GAA...A.UUUAGUGACGCAAAGCUA..UaGGGACUA.AGAUUUa..UAAA.........................auucuuauAA.AUUAUGCCAGCC-.AGUUGCCAAA AUCCCGAAAGGGCAAACCCG.C.C.GCG...A.GGCGGGGGCGCAAAGCGA..C.CGGUC--.--UC--...GAAA.................................--.GA---GAUAGCGG.CGCUGCCGUG UUUCCGAAAGGGCAAACUUC.G.G.GUA...A.CCGGGGGACGCAAAGCCA..C.GGGUC--.--CUGAc..UCCA..............................uggUC.AG---GAUAGCCG.GGUUGUCGAA CAGCGAGAAAGGCAAACUGA.U.G.GAA...A.CAUGAGGACGCAAAACUA..CaGGAGCUA.AGGUC-...GAAA.................................-G.GCUACGCUAGCC-.AGUUACCGGA AACCGACAAAGGCUAAUCUG.U.C.GUA...A.GGCAGGGGCGCAAAGUUU..C.CGGUC--.--CUGAuccAUGA.................................UC.AG---GAAAGCGG.GACUGCCGAA UGCUGUGGAAGGCAAACCAG.U.U.UUA...AaGACUGGGACGCAAAGCCU..C.CGAUCUA.AAGGUUug.CUUG.................................UA.CCUAUGAUAGCGG.GGAUCCCACA AAAUGUUAAGGGCAACCUUG.G.UuGAA...AaACCAAGGACGCAAAGUCA..C.CGGUCUA.AGGUAA...GCAG.............................cuugCU.ACUAUGACAGCGG.AACCGCCAUA CCACGAUAAAGGCAAAACUA.U.U.GAA...A.GAUAGUGACGCAAAGCUA..UaGGGUCUG.UA----...--AA.................................--.---AUGACAGCC-.AGUUAUCGAA CAGCGAUAAAGGCACACCCG.C.C.GAA...A.GACGGGGCCGCAAAGCCA..C.GGGGCUA.CAGGAA...GCGG.........gcgccgcccugccgggucucccgcCU.CCCAUGCUAGCCG.GGCUGCCGCU CAACGAUAAAGGCAAACCCG.C.G.GUA...A.CGUGGGGACGCAAAGCCA..G.UGCCCAA.CUACUU...GUAA..............................uuuAA.GAUUGGGUCGAAC.GGUUACCGAA CAAGUUCAAAAGCACACCCGaU.C.GAA...A.GACGGGGUCGCAAAGCUU..C.CGGCCUG.ACGCAU...UCGU.................................GC.GAAGUGGUAGCGG.GGUUGCCCAA CCUUGAAAAAGGCGAGUGUU.U.G.-AA...A.UGGAAAGACGCAAAGCUG..C.GAGUCUG.AAAUCC...UUCU.................................GA.AUAGGGAUAGUCG.AGUUGUCAAA CGAGAAUCAAGCCAACCCGC.C.U.C--...-.AGGCGGGACGGAAAGCCA..C.GGGUC--.------...UUUC................................a--.-----GACAGCCG.GGUUGCCUCG CACGCUUCAGGGCAAUUCAC.C.C.GUAcccA.GGGUGAAGCGCAAAGCCG..C.GGGUC--.--CGGU...GAAC.................................GC.CG---GACGGCCGuGGCCGCCGUG