Seed sequence alignment for RF00456

URS00003E472F_6239/10-77 Caenorhabditis elegans 0.0 URS0000583B75_31234/9-76 Caenorhabditis remanei 0.0 URS00007B3B53_6238/12-80 Caenorhabditis briggsae 0.0 URS0000D54011_135651/1-59 Caenorhabditis brenneri 0.0 URS0000D539CB_6233/1-63 Panagrellus redivivus 0.0 URS0000D50994_7741/8-78 Branchiostoma belcheri (Belcher's lancelet) 0.0 URS00009D31A1_6279/17-84 Brugia malayi 0.0 URS0000D55F95_6253/12-78 Ascaris suum (pig roundworm) 0.0 URS0000D556F9_225164/16-83 Lottia gigantea 0.0 URS00003BD402_7237/12-95 Drosophila pseudoobscura 0.0 URS0000492F7A_7234/9-92 Drosophila persimilis 0.0 URS0000419224_7238/9-91 Drosophila sechellia 0.0 URS0000793AE5_7227/12-94 Drosophila melanogaster (fruit fly) 0.0 URS0000419224_7240/9-91 Drosophila simulans 0.0 URS0000419224_7245/9-91 Drosophila yakuba 0.0 URS00002815E3_7260/9-95 Drosophila willistoni 0.0 URS00001F4E16_7220/9-91 Drosophila erecta 0.0 URS00000794D2_7222/9-82 Drosophila grimshawi 0.0 URS000049FA95_7230/9-82 Drosophila mojavensis 0.0 URS000015D134_7244/9-82 Drosophila virilis 0.0 URS000036C1A5_7217/9-92 Drosophila ananassae 0.0 URS0000D530D3_7159/11-120 Aedes aegypti (yellow fever mosquito) 0.0 URS000029701A_7165/11-84 Anopheles gambiae (African malaria mosquito) 0.0 URS0000D53DA9_7426/2-74 Nasonia giraulti 0.0 URS0000D53DA9_7427/2-74 Nasonia longicornis 0.0 URS000075EACA_7425/15-87 Nasonia vitripennis (jewel wasp) 0.0 URS000075AC91_7460/15-88 Apis mellifera (honey bee) 0.0 URS000075EF4F_7070/5-73 Tribolium castaneum (red flour beetle) 0.0 URS0000D563A4_6669/16-91 Daphnia pulex 0.0 URS000075ACA1_7029/1-68 Acyrthosiphon pisum (pea aphid) 0.0

CTCGAG-AGGCAGTGTGGTTAGCTGGTTGCATAT-TTCCtt.......................................---GACAAC-GgCTACCT.TCACTGCCACCCCGA- CTCGAG-AGGCAGTGTGGTTAGCTGGTTGCATAT-TGAAtt.......................................---GACAAC-GgCTACCT.TCACTGCCACCCCGA- GTCGTG-AGGCAGTGTGGTTAGCTGGTTGCATACACAGGtt.......................................---GACAAC-GgCTACCT.TCACTGCCACCCCGA- -------AGGCAGTGTGGTTAGCTGGTTGCATACTGACAtt.......................................---GACAAC-GgCTACCT.TCACTGCC-ACC---- -------TGGCAGTGTGGTTAGCTGGTTGTT-GTTAATGacc......................................-AGTTCAAC-GgCTATCTgGCACTGCCCGCC---- GTTGTG-AGGCAGTGTGATTAGCTTGCCGTTTGATTATGac.......................................-GTCACGGC-AgCTACTC.GCCCTGCC-CCACAAA ACCGGG-TGGCAGTGTGGTTAGCTGGTTGTCAGC--ATAtc.......................................--GGACAAC-GgCTATCA.TCACTGCC-GTCCTGG ACCGGC-TGGCAGTGTGGTTAGCTGGTTGTCAG---ATGtg.......................................--AGACAAC-GgCTATCA.CCACTGCC-GTCCTGG GTTCTG-TGGCAGTGTGGTTAGCTGGTAGTTCAT--GATtt.......................................-AAAACAACCA.CTATCT.ACATTGCC--CCGAAA -CGCTT-TGGCAGTGTGGTTAGCTGGTTGTGTAGC----..........caaaa.tattgcctt..tgacc.........ATTCACAGCCA.CTATCT.TCACTG-CCGCCGCGA -CGCTT-TGGCAGTGTGGTTAGCTGGTTGTGTAGC----..........caaaa.tattgcctt..tgacc.........ATTCACAGCCA.CTATCT.TCACTG-CCGCCGCGA -CGCTT-TGGCAGTGTGGTTAGCTGGTTGTGTAGC----..........caat..tattgccgt..tgaca.........ATTCACAGCCA.CTATCT.TCACTG-CCGCCGCGA -CGCTT-TGGCAGTGTGGTTAGCTGGTTGTGTAGC----..........caat..tattgccgt..tgaca.........ATTCACAGCCA.CTATCT.TCACTG-CCGCCGCGA -CGCTT-TGGCAGTGTGGTTAGCTGGTTGTGTAGC----..........caat..tattgccgt..tgaca.........ATTCACAGCCA.CTATCT.TCACTG-CCGCCGCGA -CGCTT-TGGCAGTGTGGTTAGCTGGTTGTGTAGC----..........caat..tattgccgt..tgaca.........ATTCACAGCCA.CTATCT.TCACTG-CCGCCGCGA -CGCTT-TGGCAGTGTGGTTAGCTGGTTGTGTAGC----..........caattaaattgccaaaacaata.........AACCACAGCCA.CTATCT.TCACTG-CCGCCGCGA -CGCTT-TGGCAGTGTGGTTAGCTGGTTGTGTAGC----..........caat..cattgcttg..tgaca.........ACTCACAGCCA.CTATCT.TCACTG-CCGCCGCGA -CGCTT-TGGCAGTGTGGTTAGCTGGTTGTGTGGC----..........caac.............tgaca.........AATCACAGCCA.CTATCT.TCACTG-CCGCCGCGA -CGCTT-TGGCAGTGTGGTTAGCTGGTTGTGTGGC----..........cact.............tgaaa.........AATCACAGCCA.CTATCT.TCACTG-CCGCCGCGA -CGCTT-TGGCAGTGTGGTTAGCTGGTTGTGTGGC----..........caat.............tgaca.........AATCACAGCCA.CTATCT.TCACTG-CCGCCGCGA -CGCTT-TGGCAGTGTGGTTAGCTGGTTGTGTAGC----.............tggtgctcgttggcaatta.........ATTCACAGCCA.CTATCT.TCACTG-CCGCCGCGA -CGCTA-TGGCAGTGTGGTTAGCTGGTTGTGTAGAACTTtggggggcttccgtggcgttcgcgcgcacacgggggctcagATTCACAACCA.CTATCC.GCCCTG-CCGCCGCGA ACGCTC-TGGCAGTGTGGTTAGCTGGTTGTGT-------..............ggttttcccatc...............-TTCACAGCCA.CTATCC.GCCCTG-CCGTCGCGC GCGTGT-TGGCAGTGTGGTTAGCTGGTTGTGTAGAT---................tataga...................AAGCACGACCG.CTATCG.GCACTG-CAATTATGA GCGTGT-TGGCAGTGTGGTTAGCTGGTTGTGTAGAT---................tataga...................AAGCACGACCG.CTATCG.GCACTG-CAATTATGA GCGTGT-TGGCAGTGTGGTTAGCTGGTTGTGTAGCT---................tataga...................AAGCACGACCG.CTATCG.ACACTG-CAATTATGA GCATGT-TGGCAGTGTTGTTAGCTGGTTGTGTGGCTA--................cattgt...................ATATACGACCG.CTATCG.GCACTGCA-ATTATGA ACACGG-TGGCAGTGTGGTTAGCTGGTTGTGT-------................tttttt...................GATCACGACCA.CTATCC.ATACTCCC-TCCATGA GATGGT-TGGCAGTGTGGTTAGCTGGTTGTGAA-ATA--................tttact..tg..............aATCCACAGCCA.CTATCC.AAACTGTCC-ACTGTC -------TGGCAGTGTGATTAGCTGGTTGTGTACATA--................tttgatatta..............tACTCACGGCCA.CTAAGC.ACATT--CCACT----