Rfam: Seed sequence alignment for RF00380

CP000698.1/2388949-2388777 Geobacter uraniireducens Rf4 133.7 CP000416.1/93409-93243 Lactobacillus brevis ATCC 367 137.3 CP000612.1/2523319-2523491 Desulfotomaculum reducens MI-1 142.5 CP000478.1/2034435-2034257 Syntrophobacter fumaroxidans MPOB 139 CP000478.1/2956592-2956762 Syntrophobacter fumaroxidans MPOB 139 AP008232.1/1074084-1073916 Sodalis glossinidius str. 'morsitans' 151.2 AE016825.1/3525127-3525291 Chromobacterium violaceum ATCC 12472 140.6 AE016830.1/1268265-1268435 Enterococcus faecalis V583 161.1 CP000804.1/127786-127952 Roseiflexus castenholzii DSM 13941 116.1 AE008691.1/2398115-2397950 Thermoanaerobacter tengcongensis MB4 157.4 CP001124.1/3732610-3732441 Geobacter bemidjiensis Bem 141 AE005176.1/1288920-1288763 Lactococcus lactis subsp. lactis Il1403 106.1 ACOM01000001.1/624108-624271 Clostridium butyricum E4 str. BoNT E BL5262 130.9 CP001390.1/3327040-3327209 Geobacter sp. FRC-32 133.9 AE005176.1/907250-907410 Lactococcus lactis subsp. lactis Il1403 106.1 CP001124.1/511763-511594 Geobacter bemidjiensis Bem 141 CP001348.1/2365884-2365715 Clostridium cellulolyticum H10 149.8 CP000885.1/3684636-3684463 Clostridium phytofermentans ISDg 110.7 CP000924.1/241045-241209 Thermoanaerobacter pseudethanolicus ATCC 33223 150.9

GUAAUUCCU.C.GUUA.GG.AaGAGGCG.UUUGCA.C.AA.AC..........A.............................AAAGCUACUGCCCA.GAAACG.UCGAAAGA.CGCCAA.....UGcGG.U.AGACCA.GGUUUA.GUCGGA...UUAAGGC...UU.UAUCUAAUGUAGCU.GGUUgu.....................caUUUUC.....GACC.....UACGUUGUGCA.C.UGCUGAAACUCAA.ACCA--..GGGGAAAGUC AAUAGAAGC.U.GUUA.GG.U.GAGGCU.CCUAUG.C.GG.A-..........A.............................AAUGCUACUGCUCA.GAAACG.UCGAGAAA.CGCCAA.....UG.AG.U.-CAGCU.GUUCAG.GUCAAU...CGAAGGC...CU.GAUCUAACGUAGCU.GUUA........................aGUGAU.....UAAC.....UACGCCGUAUA.G.UGCUAAAACUC-A.ACGACU..AGCUAGACAC CAUUUUCUU.C.GUUA.GG.U.GAGGCU.UCUACA.U.AG.AC..........A.............................GAUGCCACUGCCCG.GAAAUG.UCGAGAGA.CUCUAA.....CG.GG.U.-UAACA.GGUAUU.ACCGGA...UUAAGGU...UU.UACCUAAUGUGGCU.GGGAca....................uucCCAAU.....GCCC.....-UAGCUAUGUAuG.UGCUAAAGCUUGU.ACGAGU..GGGGAGGCCA UCGAUCCUC.A.GGUA.GG.U.GAGGCU.CCCGUG.UgAC.AC..........A.............................CAGGCCGCUGCCCA.GAAGUA.UCCAAAGA.UACGGCgcaacAG.GG.U.AGAACA.GGCACU.CCCGGA...UUAAGGG...UU.UGCCUAAGGCGGCU.GAGGc.......................gAUAAGc...gUCUC....uUACGGUGCACG.G.UGCUGAAGCUUGA.ACGAG-..UGGGGGAAUC AAAAUUCCU.C.GUUA.GC.AuGAGGCG.UUUGCA.C.AA.AC..........A.............................CAGGCUGCUGCCCA.GAAAUG.UCGAAAGA.CGCCAA.....UG.GG.U.AGACAA.GGUAUG.GUCGGC...AUAAGGC...UU.UACCCGAGGUAGCU.GGUUc.......................uUCGAA.....AACC.....UACGUUGUGCA.C.UGCCGAAAGUC-U.ACGAGU..GGGGAAAUGA GCAGUAUCU.C.GUUU.GG.C.GAGGCU.CCUAUA.C.AA.AU..........A.............................CAGGUUACUGAUCUgACGACG.UCGAGAGA.CGCCCA.....AG.GU.U.AGGACA.GGCUUU.AUCGGA...UUAAGGU...UU.AGCCCAAAGUAACU.UCUG.........................UUGUA.....CAGA.....UACGUUGUAUA.G.UGCCAAAACCGUG.ACGUG-..GAGAUAGGCU GCAGUGUCU.C.GUUC.GG.C.GAGGCU.CCUAUG.C.AA.AC..........A.............................CAGGUCACUGAUCUgACGACG.UCGAGAGA.CGCCCA.....AG.GU.U.AGGACA.GGCUUU.AUCGGA...UUAAGGU...UU.AGCCCAAAGUGACU.UCCA.........................AC---.....-GGA.....UACGUUGCAUA.G.UGCCAAAACCUAG.ACGCG-..GAGAUCGCUU AAUAAGAUU.U.GUUA.GG.U.GAGGCU.CCUAUA.C.AA.AC..........A.............................UAGGCUACUGCCCA.AAAAUG.UCGAGAGA.CGCCAA.....UG.GG.U.AGAACA.GGAACU.GUCGAA...UGAAGGC...UU.UUCUUAAGGUAGCU.AAAA.........................GCAAUc..gcUUUU.....UACGUUGUAUA.G.UGCUAAAGCUC-A.ACGAUA..AGAACGAUUA GUUGCUCCC.U.GGUA.GG.C.GCGGCU.U-CACG.C.AA.AC..........A.............................CAGGUUACUGCUCC.GGCCCG.UCGAAAGA.CGCUCA.....GG.GG.C.-GCACA.GCAGG-.CUCGGC...UUAAGGG...CU.UUGCCAAAGUAACU.GCGG.........................CGCUG.....CCGC.....UACGUUGUGUG.AcAGCUUAAGCUCAA.CCGGAG..GGGGAGUGUU UUAAUACCU.C.GUUA.GG.U.GAGGCU.CCUAUA.C.AG.AU..........A.............................CAGGCUGCUGCCCG.GAAACA.UCGAGAGA.UGGUAA.....CG.GG.U.-GAACA.GGCAUU.ACCGAA...UCAAGGU...UU.UGCCUAAUGCAGCU.GGAG.........................UUUU-.....CUCC.....AAAGCUGUAUA.G.UGCCAAAGCUC-A.ACGAAG..GAAAUUGGAU ACUGUUCCU.C.GUUA.GC.AuGAGGCG.UUUGCA.C.AA.AC..........A.............................GAGGCUACUGCCCA.AAAACG.UCGAAAGA.CGCCAA.....UG.GG.U.AGACCA.GGGCUU.GCCGGA...UUAAGGC...UU.GACCUAAGGUAGCU.GGUU.........................CUUCC....uGACC.....UACGUUGUGCA.C.UGCUGAAAACC-U.ACGAGU..GGGGAACCAC -CAUAGCCG.UcGGUA.GG.U.GAGGCU.ACCGCA.G.GG.AU..........A.............................CGGGUUGCUGCCGC.AGAGUCgUGGAGACAcGAUGAG.....AG.GG.C.-CAACA.GUUCAC.GUCGAAa.aACAAGGC...GU.GAAAUAGUGCAACA.----.........................ACA--.....----.....-UCGCCCUGCG.G.AGCUAAAGCUUGA.ACG---..AUAGCUUGUA AAAUAAAUU.U.GUUA.GG.U.GAGGCU.CCUAUA.A.AG.AU..........A.............................UAUGCCGCUACCCA.GAAAAA.UCGAGAGA.UUCCAA.....CG.GG.U.-UAACA.GAAAUU.AUCG--...CAAAGGU...AA.UUUUUAAUGUGGCU.GACU.........................AGAA-.....AGUC.....AAAGCUCUAUA.G.UGCUAAAGCUC-U.ACAACU..AAGUAAUUAU GAAAUUCCU.C.GUUA.GG.AaGAGGCG.UUAGCA.C.AA.AC..........A.............................GAAGCUACUGCCCA.GAAACG.UCGAAAGA.CGCCAA.....UGcGG.U.AGACCA.GAUUCA.GUCGGA...UUAAGGC...UU.UAUCUAAGGUAGCU.GGUG.........................GUGGU....uCACC.....UACGUUGUGCU.C.UGCUAAAACUCAA.ACCA--..GGGGAAAAUG CUAAC-CAU.C.GGUA.GG.U.GAGGCU.ACCACA.G.GG.AU..........A.............................CGGGUUGCUGCCGC.AGAGUCgUGGAGACAcGAUGAG.....AG.GG.C.-CAACA.GUUCAC.GUCGAAaaaAGAAGGC...GU.GAAAUAGUGCAACA.----.........................ACA--.....----.....-UCGCCCUGCG.G.AGCUAAAGCUUGA.ACGAUA.cUGGGUACUU- CGGGUUCCU.C.GUUA.CG.AuGAGGCG.UUUGCU.C.AA.AC..........A.............................CAGGCUACUGCCCG.GAAACG.UCGAAAGA.CGCCAA.....CG.GG.U.AGACCA.GGUCUU.GCCGGC...UUAAGGC...UU.GACCCAAGGUAGCU.GGUC........................cCCCGG.....GACC.....UACGUUGCGCA.C.UGCCGAAAACC-U.ACGAGA..GGGGAAUCCG CUAAAUAUU.C.GUUA.GG.U.GAGGUU.CCUAUA.C.AG.AU..........A.............................AAUGCUGCUGCCCG.GAAACA.UCGAGAGA.UGCCAA.....UG.GG.U.-CAACA.GGUAUU.ACCGAA...AUAAGGU...UU.UACUUAAUGUAGCU.GGAG.........................AUAAAg..ugGUCC.....AAAGCUGUAUA.G.UGCUAAAACUC-A.ACGAGU..GAAGGGUUUU AUUAAACUU.C.GGUA.GG.U.GAGGCU.ACCGCA.G.GG.AU..........A.............................UGGAUUGCUACCGC.GAAAUAaUGGAGACAcUAUUAG.....UU.GG.U.-UAGCA.GGUUGU.GUCGAA...UCAAGGC...AU.AACCUAAUGCAAUU.UCAAggc..................gucaAAUGU.....ACGC.....CAUGCCCUGCG.A.UGCUAAAGCUUGA.ACG---..GUUAAUUGCU UUAAUACAA.UcGUUA.GG.U.GAGGCU.CCUAUA.C.AG.AU..........A.............................CACGCUGCUGCCCG.GAAACA.UCGAGAGA.UGCUAA.....CG.GG.U.-CAACA.AGUAUU.ACCGAA...UUAAGGU...UU.UACUUAAUGCAGCU.GGAG.........................GAUG-.....CUCC.....AAAGCUGUAUA.G.UGCCAAAGCUC-A.ACGA--..AUUGAAAUGU