Rfam: Seed sequence alignment for RF00380

CP000480.1/5735476-5735649 Mycobacterium smegmatis str. MC2 155 136.7 AP009389.1/428061-428228 Pelotomaculum thermopropionicum SI 148.9 AE016958.1/3916507-3916677 Mycobacterium avium subsp. paratuberculosis K-10 144.6 CP000568.1/2645160-2644994 Clostridium thermocellum ATCC 27405 155 AE016958.1/1663674-1663849 Mycobacterium avium subsp. paratuberculosis K-10 144.6 AE016830.1/1024864-1024697 Enterococcus faecalis V583 161.1 CP000724.1/3301490-3301319 Alkaliphilus metalliredigens QYMF 151.7 AP006627.1/810916-810751 Bacillus clausii KSM-K16 137.7 CP000423.1/1285762-1285925 Lactobacillus casei ATCC 334 124.4 CP000544.1/1425650-1425831 Halorhodospira halophila SL1 127.8 CP000141.1/329676-329842 Carboxydothermus hydrogenoformans Z-2901 158.7 CR936503.1/1082354-1082189 Lactobacillus sakei subsp. sakei 23K 133.7 BA000004.3/3340549-3340386 Bacillus halodurans C-125 147.9 AE001437.1/789407-789580 Clostridium acetobutylicum ATCC 824 154 AE001437.1/3501846-3501683 Clostridium acetobutylicum ATCC 824 154 AE016830.1/1027779-1027612 Enterococcus faecalis V583 161.1 AE016830.1/1323290-1323457 Enterococcus faecalis V583 161.1

ACCGCGCUU.C.GUUA.GG.U.GAGGCU.CCUACA.C.GA.AC..........A.............................CAGGCCACUGAUCCgACGACG.UCGAGAGA.CGCCCA.....GG.GU.U.AGGACA.GAUCUU.CCCGGC...CUAAGGG...AU.GAUCCGAAGUGGCU.UCCCac....................cucAAGGU.....GGGA.....CACGUCGUGCA.G.UGCCAAAGCUCUG.AUGAG-..GAAGUGCUCG UAUGUUCUU.C.GUUA.GG.U.GAGGCU.UCUACA.C.AG.AC..........A.............................UAUGCCACUGCCCG.GAAAUG.UCGAGAGA.CGCCUA.....CG.GG.U.-UAACA.GGUACU.GCCGGA...UUAAGGU...UU.UACUUAAUGUGGCU.GGGA.........................UCUUU.....UCCC.....-UAGCUGUGUAuG.UGUCAAAGCUUUG.ACGAGU..GGAGAAGGUU CAAGCACCU.C.GGUA.GG.U.GAGGCG.UCUGCA.U.GG.AU..........A.............................CAGGCCACUGACCC.CGAACG.UCGAGAGA.CGCCCC.....GG.GU.C.AGGACA.GCUCUU.CCCGGA..cCCAAGGG...UU.GAGCCCAAGUGGCU.UCCG.........................GAGCC....cCGGA.....UACGCCGUGCA.G.UGCCGAAGCUCCG.ACGAGA..GGGGUGCGAC GAAUAUUUU.U.GUUA.GG.U.GAGGCU.CCUAUA.C.AG.AA..........A.............................GACGCUGCUGCCCG.GAAACG.UCGAAAGA.CGCCAA.....UG.GG.U.-AAACA.GGCACU.ACCGGA...UUAAGGU...UU.UGCUUAAUGCAGCU.GGU-.........................GUUGC.....AGCC.....UAAGCUGUAUA.G.UGCCAAAGCUC-A.ACGAGG.gAAAGAUAUAA CAAGCACCU.C.GCUA.GG.U.GAGGCG.UCUGCA.C.GG.AC..........A.............................CAGGCCACUGACCU.CGAACG.UCGAAAGA.CGCCCA.....GG.GU.C.AGGACA.GCUCCU.CCCGGA...UUAAGGG...UU.GAGCCCAAGUGGCU.UCCGgcu..................uuugACGGC.....CGGA.....UACGCCGUGUG.G.UGCCGAAGCUCUG.ACGAGA..GGGGUGCCGC UUUGUAAUA.A.GUUA.GG.U.GAGGCU.CCUAUA.C.AA.AC..........A.............................UAGGCUAUUGCUCA.GAAAUG.UCGAGAGA.CACCAA.....UG.AG.U.AGAACA.AGACUG.GUCGAG..gAGAAGGC...UU.UUCUCAAAAUAGCU.AAGA.........................GUGA-.....UCUU.....UACGUUGUAUA.G.UGCUAAAGCUC-A.ACGUUC..AUGUUGAUGU AAAAUAACU.U.GUUA.GG.A.GAGGCU.CCUAAA.U.GA.AC..........A.............................CAGGCUAUUGCCCA.AAAAUG.UCGAGAGA.CGCCAA.....UG.GG.U.AGAACA.GGCAUG.AUCGGA...UUAAGGU...-C.UGCUUAAGAUAGCU.GAUUca....................auuACUUG.....AAUC.....UACGUCAUUUA.G.UGCUAAAACCAGU.ACGAG-..GAGUUAAUAG UAUAUUCCU.C.GUUA.GG.U.GAGGCU.CCUGUG.CaGG.AG..........A.............................UACGCUGCUACCCA.AAAAUG.UCCAAAGA.CGCCAA.....UG.GG.U.-CAACA.GAAACC.AUCGAC...AUAAGGU...GG.UUUUUAAUGUAGCU.GGCA.........................AUA--.....-GCC.....UAUGCCGCACA.G.UGCUAAAGCUC-U.ACGAAU.gGAGGCUAUUU GGUGCUUUC.C.GUUA.GG.U.GAGGCU.CCUAUA.C.G-.AA..........C.............................AAUGCUGCUGCUCA.GAAACA.UCGAGAGA.UGCCAA....uUG.AG.U.-CAACU.GCGUCU.GCCC-A...UUAAGGC...UU.ACGCUAAUGCAGCU.GAAG.........................CUCG-.....CUUC.....UAGG-CGUAUA.G.UGCUAAAACUA-A.ACGAUU..GGGAUGCUUU AGCGAGUCC.C.GUUA.GG.U.GAGGCU.CCUGUG.C.CG.AC..........A.............................AGGUGUGCUGCCCA.GAAAUG.UCGAGAGA.CGCCAA.....UG.GG.U.UGAACA.GGCCCU.GCCGAA...CGAAGGC...UU.GGUCUAAUGCACAC.CGCGgccc................gcgccCUGCG.....CGCGgccuuUGAGUCGCACA.G.UGCCGAAGCUC-U.ACGAAG..GGGACUUGGU UAUUUUCUU.C.GUUA.GG.U.GAGGCU.ACUUCC.U.GG.AU..........A.............................UAGGCUACUGCCCG.GAAAUG.UCGAGAGA.CACCAA.....CG.GG.U.-AAACA.GGUAUU.ACCGGC...UUAAGGU...UU.UACCUAAUGUAGCU.GAGG.........................GUUU-.....CCUC.....UAAGCCAGGUU.G.AGCUAAAGCUUUG.ACGAGU..GGAGAAGGUU UCGCUUUUC.C.GUUA.GG.U.GAGGCU.CCUAUA.U.GA.AC..........A.............................UACGCUGCUACUCA.GAAACA.UCGAGAGA.UGCCAA....uUG.AG.U.-CAACA.AAAACU.GCC-AA...UGAAGGC...UU.UUUCUAACGUAGCU.GAAC.........................AUGG-.....UUUC.....UACGUCAUAUA.G.UGCUAAAACUG-A.ACGAUU..GGGAACGCCA CAACCACUU.C.GUUA.GG.U.GAGGCU.CCUGUA.U.GG.AG..........A.............................UAUGCUGCUGCCCA.AAAACG.UCCAAAGA.CGCCAA.....UG.GG.U.-CAACA.GAAAUC.AUCGAC...AUAAGGU...GA.UUUUUAAUGUAGCU.GGCA.........................AUG--.....-UCC.....UAUGCCAUACA.G.UGCUAAAGCUC-U.ACGAAU..GAAGGGAAUC AAAAGUUUU.A.GUUA.GG.U.GAGGCU.CCUAUA.U.AG.AU..........A.............................UACGCUACUGCCCA.GAAACA.UCGAGAGA.UGCCAAa...uUG.GG.U.-CAGCA.GAUAUU.ACCGAA...UCAAGGU...UC.UAUCUAAUGUAGCUgGAUUua.....................uaGUUUU.....AAUC.....UAAGCUAUAUA.G.UGCUAAAGCUC-U.ACUGUC..UAAUUUCGUA AUAAUGUAU.U.GUUA.GG.U.GAGGCU.CCUAUA.U.AG.AU..........A.............................UAUGCUACUGCCCA.AAAAUA.UCGAAAGA.UGCCAA.....UG.GG.U.-UAACA.GGUACU.ACCGAA...UUAAGGU...UU.UACUUAAUGUAGCU.GGGA.........................UUA--.....-CCC.....AAAGCUAUAUA.G.UGCUAAAGCUC-A.ACGAAA..GAUAGUGUAU AUAGAAUCA.U.AUUA.GG.U.GAGGUU.ACUCUGaA.GA.AC..........A.............................CAGGUUAUCGCUCG.GAAAUG.UCGAGAGA.CAGUAA.....CG.AG.U.AAAGCA.GGGAUU.GUCGAA...UUAAGGC...-U.UUCCUAAGAUAACU.AGAA.........................UUUUU.....UUCU.....UACGUCUCAGA.A.AGCCAAAGCUC-A.AUUAUU..GUGAUUACCC CUGAAUAAU.U.GUUA.GG.U.GAGGCU.CCUAUU.U.GG.AC..........A.............................AAUGCUGCUGCCGC.GAAAGGaUCGAGAGAcCCUUAG.....UU.GG.U.UGAACA.GGAAUA.AUCG--...UGAAGGU...UA.UUCAUAAUGUAGCU.GAUA.........................CAUGU.....UAUC.....UACGCCCUAUA.G.UGCUAAAGCUC-A.ACGAUA..GAGAAUCUUA