Rfam: Seed sequence alignment for RF00380

AE016822.1/2178766-2178596 Leifsonia xyli subsp. xyli str. CTCB07 142.3 CP000416.1/2122885-2122722 Lactobacillus brevis ATCC 367 137.3 AE016830.1/3116366-3116533 Enterococcus faecalis V583 161.1 CP000482.1/1208117-1207951 Pelobacter propionicus DSM 2379 137.5 BA000004.3/3341002-3340838 Bacillus halodurans C-125 147.9 CP000673.1/3641499-3641330 Clostridium kluyveri DSM 555 151.2 BA000004.3/2041941-2042105 Bacillus halodurans C-125 147.9 AAWL01000016.1/43438-43265 Thermosinus carboxydivorans Nor1 163.1

AGAGCACUU.C.GUUA.GG.U.GAGGCU.CCUGCG.U.GA.AC..........A.............................CAGGCCACUGAUCUgACGACG.UCGAGAGA.UGCCCA.....AG.AU.C.AGGACA.GGUCUC.CCCGGC...CUAAGGG...GU.GACCCCAGGUGGCU.UCCCg.......................cCCGGC.....GGGA.....CACGUCGCGCA.G.UGCCGAAACUCUU.ACGUG-..GAAGUGCCGA AUAAAUUGC.A.AUUA.GG.U.GAGGUU.ACUUUA.A.GA.AC..........A.............................UAGGUUGUUGCCCA.GAAAUG.UCGAGAGA.CAGGAA.....UG.AG.U.AAAGCA.GAAACU.GCCGAA...UUAAGGC...UU.UUUC-AAAACAACU.AGAC.........................UAGU-.....-UCU.....UACGUCUUAAA.G.UGCUAAAACUC-A.AUGAA-..UGCGUCGAUA AAAUAACCU.U.GUUA.GG.U.GAGGCU.CCUAUC.C.AA.AC..........A.............................UAGGCUAUUGCGCA.GAAAUG.UCGAAAGA.CACCAA.....UG.UG.U.AAAACA.GGAAUG.GUCGAA...UUAAGGC...UC.UUCUAAAAAUAGCU.AAGA.........................GAAA-.....UCUU.....UACGUUGGAUA.G.UGCUAAAGCUCAG.ACGAUG..AGAACCGAUU GUCGUUCCU.C.GUUA.GAaU.GAGGCG.UUUGCA.C.AA.AC..........A.............................CAGGCUGCUACCCA.GAAACG.UCGAAAGA.CGCCAA.....UG.CG.G.UCAACA.GGUUCU.GCCGGA...UUAAGGC...UU.AACCUAAUGCAGCU.GGCC.........................CCAG-.....-GCC.....UACGUUGUGCU.C.UGCCAAAAUCC-A.ACCAGA..GGGGAAUUGG AGUUGUCUU.C.GUUA.GG.U.GAGGCU.CCUGUG.CuGG.AG..........A.............................UACGCUGCUGCCCA.AAAACG.UCCAAAGA.CGCCAA.....UG.GG.U.-CAACA.GAAAUC.AUCGAC...AUAAGGU...GA.UUUUUAAUGUAGCU.GGAU.........................GAU--.....-UCC.....UAUGCCGCACA.G.UGCUAAAGCUC-U.ACGAAU..GGGGGACAGU UUUUUGUUA.U.GUUA.GG.U.GAGGCU.CCUAUA.U.AG.AU..........A.............................UAUGCUACUGCCCG.GAAACA.UCGAGAGA.UGCCAA.....UG.GG.U.-CAACA.GGUAUU.ACCGAA...UUAAGGU...UU.UACUUAAUGUAGCU.GGACa......................aaAUUUA.....GUCU.....AAAGCUAUAUA.G.UGCUAAAACUCAG.ACGAU-..UUAAAAGUUU AAUCAUCCU.C.GUUA.GG.U.GAGGCU.CCUGUG.CuGG.AG..........A.............................UACGCUGCUGCCCA.AAAACG.UCCAAAGA.CGCCAA.....UG.GG.U.-CAACA.GAAACC.AUCGAC...AUAAGGU...GG.UUUUUAACGUAGCU.GGCU.........................UCG--.....-UCC.....UAUGCCGCACA.G.UGCUAAAGCUC-U.ACGAAU..GGAGGAGUUU GUACUUCCU.C.GUUA.GG.U.GAGGCU.CCUGUA.U.AA.AC..........A.............................UAGGCCACUGCCCG.GAAAUG.UCGAGAGA.CGCCAA.....UG.GG.U.AGAACA.GGUAUU.ACCGGC...AUAAGGU...UU.UACUUAAGGUGGCU.GAGCau....................uuuGUUUG.....ACUC.....UACGUUAUACA.G.UGCCAAAGCUCAA.ACGAGU..GGGGAGGUUA