Seed sequence alignment for RF03054

Pseudomonas stutzeri MF28 0.0 unclassified sequences 0.0 Pseudomonas sp. VLB120 0.0 unclassified sequences 0.0 Pseudomonas moraviensis R28-S 0.0 Pseudomonas putida W619 0.0 Pseudomonas putida str. Idaho 0.0 Pseudomonas putida DOT-T1E 0.0 Pseudomonas putida B6-2 0.0 unclassified sequences 0.0 Pseudomonas putida S12 0.0 Pseudomonas putida BIRD-1 0.0 unclassified sequences 0.0 Pseudomonas putida W619 0.0 Pseudomonas putida str. Idaho 0.0 Pseudomonas putida DOT-T1E 0.0 Pseudomonas putida B6-2 0.0 Pseudomonas putida LS46 0.0 Pseudomonas putida TRO1 0.0 Pseudomonas putida S12 0.0 Pseudomonas putida BIRD-1 0.0 unclassified sequences 0.0 Pseudomonas sp. VLB120 0.0 Vibrio furnissii NCTC 11218 0.0 Vibrio furnissii CIP 102972 0.0 Vibrio fluvialis I21563 0.0 Vibrio fluvialis PG41 0.0 Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 0.0 Vibrio sp. EJY3 0.0 Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 0.0
UCUUCGAGUAGAAGCGGUUAGC..GCCAGcgg.....................GUUU-.................................ccgGUGG...CGU.GGGACAUUGCUCUUGCG CUUUCGAGUAGAAGCGGUCAGU..GCCG-........................AAA--....................................-UGG...GAU.GGGGCAUUGCUCAGGCA CGGUCGAGUAGAAGCGGUCAGU..GCCG-........................GUGGA....................................-CGG...CAU.GGGGCAUUGCUCUUGCG CUGGCGAGUAGAAGCGGUUAGU..GCCA-........................GCGA-....................................-UGG...CAU.AGGACAUUGCUCUUGCG CUUUCGAGUAGAAGCGGUCAGU..GCCA-........................GCAA-....................................-UGG...CAC.CGGGCAUUGCUCUUGCG CCUUCGAGUAGAAGCGGUCAGU..GCCA-........................GAAA-....................................-UGG...CAU.GGGGCAUUGCUCUUGCG UCAGCGAGUAGAAGCGGUCAGU..GCCA-........................GGCA-....................................-UGG...CAU.GGGGCAUUGCUCUUGCG UCAGCGAGUAGAAGCGGUCAGU..GCCA-........................GGCA-....................................-UGG...CAU.GGGGCAUUGCUCUUGCG UCAGCGAGUAGAAGCGGUCAGU..GCCA-........................GGCA-....................................-UGG...CAU.GGGGCAUUGCUCUUGCG UCAGCGAGUAGAAGCGGUCAGU..GCCA-........................GGCA-....................................-UGG...CAU.GGGGCAUUGCUCUUGCG CCUGCGAGUAGAAGCGGUCAGU..GCCA-........................GGCA-....................................-UGG...CAU.GGGGCAUUGCUCUUGCG CCUGCGAGUAGAAGCGGUCAGU..GCCA-........................GGCA-....................................-UGG...CAU.GGGGCAUUGCUCUUGCG CAGUCGAGUAGAAGCGGUCAGU..GCCA-........................GAAA-....................................-UGG...CAU.GGGACAUUGCUCUGGCG CAGUCGAGUAGAAGCGGUCAGU..GCCA-........................GAAA-....................................-UGG...CAU.GGGACAUUGCUCUGGCG AACUCGAGUAGAAGCGGUCAGU..GCC--........................UAAAGau..................................--GG...CAU.GGGACAUUGCUCUGGCG AACUCGAGUAGAAGCGGUCAGU..GCCAA........................AAG--....................................UUGG...CAU.GGGACAUUGCUCUGGCG AACUCGAGUAGAAGCGGUCAGU..GCCAA........................AAG--....................................UUGG...CAU.GGGACAUUGCUCUGGCG AACUCGAGUAGAAGCGGUCAGU..GCCAA........................AAG--....................................UUGG...CAU.GGGACAUUGCUCUGGCG AACUCGAGUAGAAGCGGUCAGU..GCCAA........................AAG--....................................UUGG...CAU.GGGACAUUGCUCUGGCG AACUCGAGUAGAAGCGGUCAGU..GCCCA........................AAGA-....................................UGG-...CAU.GGGACAUUGCUCUGGCG AACUCGAGUAGAAGCGGUCAGU..GCCCA........................AAGA-....................................UGG-...CAU.GGGACAUUGCUCUGGCG AACUCGAGUAGAAGCGGUCAGU..GCCCA........................AAGA-....................................UGG-...CAU.GGGACAUUGCUCUGGCG CAUGGGAGUAGAAGCGGUCAGU..GCCUG........................GAAA-....................................U-GG...CAU.GGGACAUUGCUCUGGCG UUCGUGAGUAGAAGCGGUUAGA..UGUC-........................GUGAU....................................-GGC...AUC.GGGACAUUGCUCAUAGU UUCGUGAGUAGAAGCGGUUAGA..UGUC-........................GUGAU....................................-GGC...AUC.GGGACAUUGCUCAUAGU UUCGUGAGUAGAAGCGGUUAGG..UGCC-........................GGGC-....................................-GGC...AUC.GGGACAUUGCUCAUAGU UUCGUGAGUAGAAGCGGUUAGG..UGCC-........................GGGC-....................................-GGC...AUC.GGGACAUUGCUCAUAGU AGCGUGAGUAGAAGCGGUUAGA..UACCU........................AAACAua..................................AGGU...GUC.GGGACAUUGCUCAUAGU AGCGUGAGUAGAAGCGGUUAGA..UACCU........................AAACAua..................................AGGU...GUC.GGGACAUUGCUCAUAGU UAGUUGAGUAGAAGCGGUUAAG..AG---........................UUGAAu...................................---C...UCU.GGGACAUUGCUCAAAGG

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