# STOCKHOLM 1.0
#=GF ID TLS-PK2
#=GF AC RF01077
#=GF DE Pseudoknot of tRNA-like structure
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 42.0
#=GF NC 39.5
#=GF TC 88.8
#=GF SE Pseudobase
#=GF SS Pseudobase
#=GF TP Cis-reg;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 29.29 -Z 2958934 CM SEQDB
#=GF DR PKBASE; PKB00139;
#=GF DR PKBASE; PKB00057;
#=GF DR SO; 0005836; regulatory_region;
#=GF DR GO; 0045069; regulation of viral genome replication;
#=GF RN [1]
#=GF RM 16453568
#=GF RT The three-dimensional folding of the tRNA-like structure of tobacco mosaic
#=GF RT virus RNA. A new building principle applied twice.
#=GF RA Rietveld K, Linschooten K, Pleij CW, Bosch L
#=GF RL EMBO J. 1984;3:2613-2619.
#=GF RN [2]
#=GF RM 1935928
#=GF RT tRNA-like structures. Structure, function and evolutionary significance.
#=GF RA Mans RM, Pleij CW, Bosch L
#=GF RL Eur J Biochem. 1991;201:303-324.
#=GF RN [3]
#=GF RM 8608444
#=GF RT A central pseudoknotted three-way junction imposes tRNA-like mimicry and
#=GF RT the orientation of three 5' upstream pseudoknots in the 3' terminus of
#=GF RT tobacco mosaic virus RNA.
#=GF RA Felden B, Florentz C, Giege R, Westhof E
#=GF RL RNA. 1996;2:201-212.
#=GF WK Transfer_RNA-like_structures
#=GF SQ 4

AB354955.1/1390-1455 GUGUCUUGGAUCGCGCGGGUCAAAUGUAUAUGGUUCAUAUACAUCCGCAGGCACGUAAUAAA-GCGA
AB083196.1/6281-6347 GUGUCUUGGAGCGCGCGGAGUAAACAUAUAUGGUUCAUAUAUGUCCGUAGGCACGUAAAAAAAGCGA
EF375551.1/6292-6357 GUGUCUUGGUUCGCGCGGGUCAAGUGUAUAUGGUGCAUAUACAUCCGUAGGCACGUAAUAAA-GCGA
DQ355023.1/6272-6337 GUGUCUUGGAACGCGCGGGUCAAAUAUAAGUGGUUCACUUAUAUCCGUAGGCACGAAAAAUU-GCGU
#=GC SS_cons         <<<<<<----AAAA<<<<-----<<<<<<<<_____>>>>>>>>>>>>>>>>>>::::::::.aaaa
#=GC RF              GUGuCUUGGAuCGCgCGGGucAAaugUAuaUGGUuCAuaUAcauCCGcAGgCACGuAAaAAA.GCGA
//