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Table view (127 sequence regions)

Original order Download FASTA Accession Bit score Type Start End Description Species View context
0
NC_006577.2 N/A seed 13,601 13,681 Human coronavirus HKU1, complete genome Human coronavirus HKU1 ENA graphic
1
NC_003045.1 N/A seed 13,342 13,422 Bovine coronavirus, complete genome Bovine coronavirus ENA graphic
2
NC_006213.1 N/A seed 13,341 13,421 Human coronavirus OC43 strain ATCC VR-759, complete genome Human coronavirus OC43 ENA graphic
3
NC_026011.1 N/A seed 13,485 13,565 Betacoronavirus HKU24 strain HKU24-R05005I, complete genome Betacoronavirus HKU24 ENA graphic
4
NC_004718.3 N/A seed 13,399 13,476 SARS coronavirus, complete genome Severe acute respiratory syndrome-related coronavirus ENA graphic
5
NC_022103.1 N/A seed 12,533 12,607 Bat coronavirus CDPHE15/USA/2006, complete genome Bat coronavirus CDPHE15/USA/2006 ENA graphic
6
NC_002306.3 N/A seed 12,410 12,484 Feline infectious peritonitis virus, complete genome Feline infectious peritonitis virus (FIPV) ENA graphic
7
NC_038861.1 N/A seed 12,339 12,413 Transmissible gastroenteritis virus complete genome, genomic RNA Transmissible gastroenteritis virus ENA graphic
8
NC_028806.1 N/A seed 12,325 12,399 Swine enteric coronavirus strain Italy/213306/2009, complete genome Swine enteric coronavirus ENA graphic
9
NC_017083.1 N/A seed 13,520 13,600 Rabbit coronavirus HKU14, complete genome Rabbit coronavirus HKU14 ENA graphic
10
NC_014470.1 N/A seed 13,298 13,375 Bat coronavirus BM48-31/BGR/2008, complete genome Bat coronavirus BM48-31/BGR/2008 ENA graphic
11
NC_030292.1 N/A seed 12,123 12,197 Ferret coronavirus isolate FRCoV-NL-2010, complete genome Ferret coronavirus ENA graphic
12
NC_009020.1 N/A seed 13,686 13,766 Bat coronavirus HKU5-1, complete genome Pipistrellus bat coronavirus HKU5 ENA graphic
13
NC_023760.1 N/A seed 12,300 12,374 Mink coronavirus strain WD1127, complete genome Mink coronavirus strain WD1127 ENA graphic
14
NC_003436.1 N/A seed 12,621 12,695 Porcine epidemic diarrhea virus, complete genome Porcine epidemic diarrhea virus ENA graphic
15
NC_028833.1 N/A seed 11,986 12,060 BtNv-AlphaCoV/SC2013, complete genome BtNv-AlphaCoV/SC2013 ENA graphic
16
NC_039207.1 N/A seed 13,585 13,665 Betacoronavirus Erinaceus/VMC/DEU/2012 isolate ErinaceusCoV/2012-174/GER/2012, complete genome Betacoronavirus Erinaceus/VMC/DEU/2012 ENA graphic
17
NC_010438.1 N/A seed 12,936 13,010 Bat coronavirus HKU8, complete genome Miniopterus bat coronavirus HKU8 ENA graphic
18
NC_034440.1 N/A seed 13,207 13,287 Bat coronavirus isolate PREDICT/PDF-2180, complete genome Bat coronavirus ENA graphic
19
NC_010646.1 N/A seed 12,389 12,466 Beluga Whale coronavirus SW1, complete genome Beluga Whale coronavirus SW1 ENA graphic
20
NC_028824.1 N/A seed 12,252 12,326 BtRf-AlphaCoV/YN2012, complete genome BtRf-AlphaCoV/YN2012 ENA graphic
21
NC_009988.1 N/A seed 12,447 12,521 Bat coronavirus HKU2, complete genome Rhinolophus bat coronavirus HKU2 ENA graphic
22
NC_018871.1 N/A seed 12,618 12,692 Rousettus bat coronavirus HKU10, complete genome Rousettus bat coronavirus HKU10 ENA graphic
23
NC_032107.1 N/A seed 12,473 12,547 NL63-related bat coronavirus strain BtKYNL63-9a, complete genome NL63-related bat coronavirus ENA graphic
24
NC_005831.2 N/A seed 12,440 12,514 Human Coronavirus NL63, complete genome Human coronavirus NL63 ENA graphic
25
NC_002645.1 N/A seed 12,521 12,595 Human coronavirus 229E, complete genome Human coronavirus 229E ENA graphic
26
NC_009657.1 N/A seed 12,651 12,725 Scotophilus bat coronavirus 512, complete genome Scotophilus bat coronavirus 512 ENA graphic
27
NC_025217.1 N/A seed 13,932 14,009 Bat Hp-betacoronavirus/Zhejiang2013, complete genome Bat Hp-betacoronavirus/Zhejiang2013 ENA graphic
28
NC_010437.1 N/A seed 13,049 13,123 Bat coronavirus 1A, complete genome Bat coronavirus 1A ENA graphic
29
NC_028752.1 N/A seed 12,536 12,610 Camel alphacoronavirus isolate camel/Riyadh/Ry141/2015, complete genome Camel alphacoronavirus ENA graphic
30
NC_009019.1 N/A seed 13,551 13,631 Bat coronavirus HKU4-1, complete genome Tylonycteris bat coronavirus HKU4 ENA graphic
31
NC_028811.1 N/A seed 12,239 12,313 BtMr-AlphaCoV/SAX2011, complete genome BtMr-AlphaCoV/SAX2011 ENA graphic
32
NC_038294.1 N/A seed 13,433 13,513 Betacoronavirus England 1, complete genome Betacoronavirus England 1 ENA graphic
33
NC_019843.3 N/A seed 13,434 13,514 Middle East respiratory syndrome coronavirus, complete genome Middle East respiratory syndrome-related coronavirus ENA graphic
34
NC_028814.1 N/A seed 12,204 12,278 BtRf-AlphaCoV/HuB2013, complete genome BtRf-AlphaCoV/HuB2013 () ENA graphic
35
NC_030886.1 N/A seed 13,084 13,164 Rousettus bat coronavirus isolate GCCDC1 356, complete genome Rousettus bat coronavirus ENA graphic
36
NC_009021.1 N/A seed 12,952 13,032 Bat coronavirus HKU9-1, complete genome Rousettus bat coronavirus HKU9 ENA graphic
37
NC_016994.1 N/A seed 11,312 11,389 Night-heron coronavirus HKU19, complete genome Night heron coronavirus HKU19 ENA graphic
38
NC_032730.1 N/A seed 12,539 12,604 Lucheng Rn rat coronavirus isolate Lucheng-19, complete genome Lucheng Rn rat coronavirus ENA graphic
39
NC_011550.1 N/A seed 11,593 11,670 Munia coronavirus HKU13-3514, complete genome Munia coronavirus HKU13-3514 ENA graphic
40
NC_034972.1 N/A seed 12,332 12,397 Coronavirus AcCoV-JC34, complete genome Coronavirus AcCoV-JC34 ENA graphic
41
NC_016996.1 N/A seed 11,062 11,139 Common-moorhen coronavirus HKU21, complete genome Common moorhen coronavirus HKU21 ENA graphic
42
NC_011547.1 N/A seed 11,353 11,430 Bulbul coronavirus HKU11-934, complete genome Bulbul coronavirus HKU11-934 ENA graphic
43
NC_016992.1 N/A seed 11,425 11,502 Sparrow coronavirus HKU17, complete genome Sparrow coronavirus HKU17 ENA graphic
44
NC_039208.1 N/A seed 11,408 11,485 Porcine coronavirus HKU15 strain HKU15-155, complete genome Porcine coronavirus HKU15 ENA graphic
45
NC_016991.1 N/A seed 11,350 11,427 White-eye coronavirus HKU16, complete genome White-eye coronavirus HKU16 ENA graphic
46
NC_011549.1 N/A seed 11,404 11,481 Thrush coronavirus HKU12-600, complete genome Thrush coronavirus HKU12-600 ENA graphic
47
NC_016993.1 N/A seed 11,435 11,512 Magpie-robin coronavirus HKU18, complete genome Magpie-robin coronavirus HKU18 () ENA graphic
48
NC_016995.1 N/A seed 10,923 11,000 Wigeon coronavirus HKU20, complete genome Wigeon coronavirus HKU20 ENA graphic
49
URS00021ED9B3_2697049 N/A seed 11 88 Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome from Severe acute respiratory syndrome coronavirus 2 (PDB 6XRZ, chain A) Severe acute respiratory syndrome coronavirus 2  
50
URS0002617719_2697049 N/A seed 144 220 other from 1 species Severe acute respiratory syndrome coronavirus 2  
0
JX993988.1 79.90 full 13,298 13,375 Bat coronavirus Cp/Yunnan2011, complete genome. Bat coronavirus Cp/Yunnan2011 ENA graphic
1
MN908947.3 79.40 full 13,469 13,546 Severe acute respiratory syndrome coronavirus 2 isolate Wuhan-Hu-1, complete genome Severe acute respiratory syndrome coronavirus 2 ENA graphic
2
AY357075.1 78.80 full 13,385 13,462 AY357075.1 SARS coronavirus PUMC02, complete genome SARS coronavirus PUMC02 ENA graphic
3
AY274119.3 78.80 full 13,399 13,476 SARS coronavirus TOR2, complete genome. SARS coronavirus ENA graphic
4
AY772062.1 78.80 full 13,409 13,486 SARS coronavirus WH20, complete genome SARS coronavirus WH20 ENA graphic
5
DQ412042.1 78.50 full 13,380 13,457 DQ412042.1 Bat SARS coronavirus Rf1, complete genome Bat SARS CoV Rf1/2004 ENA graphic
6
KP886808.1 78.40 full 13,398 13,475 Bat SARS-like coronavirus YNLF_31C, complete genome. Bat SARS-like coronavirus YNLF_31C ENA graphic
7
AY994055.1 77.90 full 12,410 12,484 Feline infectious peritonitis virus, complete genome. Feline infectious peritonitis virus (strain 79-1146) ENA graphic
8
EU186072.1 77.90 full 12,378 12,452 EU186072.1 Feline coronavirus isolate Black, complete genome Feline coronavirus ENA graphic
9
JQ404410.1 77.90 full 12,341 12,415 Canine coronavirus strain TN-449, complete genome. Canine coronavirus ENA graphic
10
KY967717.1 77.80 full 11,208 11,285 Wencheng Sm shrew coronavirus isolate Xingguo-101 ORF1ab polyprotein, spike glycoprotein, envelope protein, membrane protein, and nucleocapsid protein genes, complete cds. Wencheng Sm shrew coronavirus ENA graphic
11
KF367457.1 77.50 full 13,399 13,476 Bat SARS-like coronavirus WIV1, complete genome Bat SARS-like coronavirus WIV1 () ENA graphic
12
KT444582.1 77.50 full 13,399 13,476 KT444582.1 SARS-like coronavirus WIV16, complete genome SARS-like coronavirus WIV16 ENA graphic
13
AJ271965.2 76.50 full 12,339 12,413 Transmissible gastroenteritis virus complete genome, genomic RNA Porcine transmissible gastroenteritis coronavirus strain Purdue ENA graphic
14
KF430219.1 76.00 full 12,533 12,607 Bat coronavirus CDPHE15/USA/2006, complete genome. Bat coronavirus CDPHE15/USA/2006 ENA graphic
15
KJ473809.1 75.80 full 11,986 12,060 BtNv-AlphaCoV/SC2013, complete genome. BtNv-AlphaCoV/SC2013 ENA graphic
16
KM347965.1 74.50 full 12,123 12,197 Ferret coronavirus isolate FRCoV-NL-2010, complete genome. Ferret coronavirus ENA graphic
17
KC545383.1 74.10 full 13,585 13,665 Betacoronavirus Erinaceus/VMC/DEU/2012 isolate ErinaceusCoV/2012-174/GER/2012, complete genome. Betacoronavirus Erinaceus/VMC/DEU/2012 ENA graphic
18
MK720945.1 73.50 full 12,408 12,482 MK720945.1 Rhinolophus bat coronavirus HKU32 strain TLC26A, complete genome Rhinolophus bat coronavirus HKU32 ENA graphic
19
KJ584361.1 73.20 full 12,617 12,691 KJ584361.1 Porcine epidemic diarrhea virus strain OH15962, complete genome Porcine epidemic diarrhea virus ENA graphic
20
MN611525.1 73.20 full 12,416 12,490 MN611525.1 Hipposideros pomona bat coronavirus CHB25 isolate CHB0025, complete genome Hipposideros pomona bat coronavirus CHB25 ENA graphic
21
HM245926.1 72.80 full 12,264 12,338 Mink coronavirus strain WD1133, complete genome. Mink coronavirus strain WD1133 ENA graphic
22
MN611518.1 72.70 full 12,923 12,997 MN611518.1 Miniopterus pusillus bat coronavirus HKU8-related isolate 6610, complete genome Miniopterus pusillus bat coronavirus HKU8-related ENA graphic
23
MZ328299.1 72.70 full 12,370 12,444 MZ328299.1 Jingmen Miniopterus schreibersii alphacoronavirus 1, complete genome Jingmen Miniopterus schreibersii alphacoronavirus 1 ENA graphic
24
EU420139.1 72.50 full 12,936 13,010 Bat coronavirus HKU8 strain AFCD77, complete genome. Miniopterus bat coronavirus HKU8 ENA graphic
25
EF065509.1 72.20 full 13,686 13,766 Bat coronavirus HKU5-1, complete genome. Pipistrellus bat coronavirus HKU5 ENA graphic
26
KJ473796.1 71.90 full 13,048 13,122 KJ473796.1 BtMf-AlphaCoV/JX2012, complete genome BtMf-AlphaCoV/JX2012 ENA graphic
27
KU762338.1 71.70 full 13,084 13,164 Rousettus bat coronavirus isolate GCCDC1 356, complete genome. Rousettus bat coronavirus ENA graphic
28
EU111742.1 71.50 full 12,389 12,466 EU111742.1 Coronavirus SW1, complete genome Beluga Whale coronavirus SW1 ENA graphic
29
MK211373.1 70.50 full 12,442 12,516 MK211373.1 Coronavirus BtRs-AlphaCoV/YN2018, complete genome Coronavirus BtRs-AlphaCoV/YN2018 ENA graphic
30
KT368915.1 70.50 full 12,536 12,610 KT368915.1 Camel alphacoronavirus isolate camel/Taif/T157(a)/2015, complete genome Camel alphacoronavirus ENA graphic
31
EF203064.1 70.50 full 12,447 12,521 EF203064.1 Bat coronavirus HKU2 strain HKU2/GD/430/2006, complete genome Rhinolophus bat coronavirus HKU2 ENA graphic
32
AF304460.1 69.60 full 12,521 12,595 Human coronavirus 229E, complete genome. Human coronavirus 229E ENA graphic
33
KF636752.1 69.60 full 13,932 14,009 Bat Hp-betacoronavirus/Zhejiang2013, complete genome. Bat Hp-betacoronavirus/Zhejiang2013 ENA graphic
34
JQ065048.1 69.40 full 10,923 11,000 Wigeon coronavirus HKU20 strain HKU20-9243, complete genome. Wigeon coronavirus HKU20 ENA graphic
35
JQ989266.1 69.40 full 12,621 12,695 JQ989266.1 Hipposideros bat coronavirus HKU10 isolate TT3A, complete genome Hipposideros bat coronavirus HKU10 ENA graphic
36
JQ989267.1 69.40 full 12,621 12,695 Hipposideros bat coronavirus HKU10 isolate SL12A, complete genome. Hipposideros bat coronavirus HKU10 ENA graphic
37
KJ473821.1 69.40 full 13,699 13,779 BtVs-BetaCoV/SC2013, complete genome. BtVs-BetaCoV/SC2013 ENA graphic
38
EF065505.1 69.10 full 13,551 13,631 Bat coronavirus HKU4-1, complete genome. Tylonycteris bat coronavirus HKU4 ENA graphic
39
FJ425187.1 68.90 full 13,328 13,408 FJ425187.1 White-tailed deer coronavirus US/OH-WD470/1994, complete genome White-tailed deer coronavirus US/OH-WD470/1994 ENA graphic
40
LC061274.1 68.90 full 13,445 13,525 LC061274.1 Equine coronavirus RNA, complete genome, strain: Obihiro12-2 Equine coronavirus ENA graphic
41
FJ425184.1 68.90 full 13,326 13,406 FJ425184.1 Waterbuck coronavirus US/OH-WD358-TC/1994, complete genome Waterbuck coronavirus US/OH-WD358-TC/1994 ENA graphic
42
KJ473798.1 68.80 full 12,915 12,989 KJ473798.1 BtMf-AlphaCoV/HuB2013, complete genome BtMf-AlphaCoV/HuB2013 ENA graphic
43
KJ473800.1 68.80 full 12,914 12,988 KJ473800.1 BtMf-AlphaCoV/HeN2013, complete genome BtMf-AlphaCoV/HeN2013 ENA graphic
44
KM349742.1 68.70 full 13,485 13,565 Betacoronavirus HKU24 strain HKU24-R05005I, complete genome. Betacoronavirus HKU24 ENA graphic
45
JQ065049.1 68.70 full 11,062 11,139 Common-moorhen coronavirus HKU21 strain HKU21-8295, complete genome. Common moorhen coronavirus HKU21 ENA graphic
46
JN874562.1 68.30 full 13,403 13,483 Rabbit coronavirus HKU14 strain HKU14-10, complete genome. Rabbit coronavirus HKU14 ENA graphic
47
EF065513.1 68.30 full 12,952 13,032 Bat coronavirus HKU9-1, complete genome. Rousettus bat coronavirus HKU9 ENA graphic
48
MW345815.1 68.10 full 11,663 11,740 MW345815.1 Deltacoronavirus HNU1-2, complete genome Deltacoronavirus HNU1-2 ENA graphic
49
AY391777.1 67.80 full 13,342 13,422 ENA|AY391777|AY391777.1 Human coronavirus OC43, complete genome. Human coronavirus OC43 ENA graphic
50
AY585228.1 67.80 full 13,341 13,421 Human coronavirus OC43 strain ATCC VR-759, complete genome. Human coronavirus OC43 ENA graphic
51
KC164505.2 67.20 full 13,433 13,513 Betacoronavirus England 1, complete genome. Betacoronavirus England 1 ENA graphic
52
DQ339101.1 67.00 full 13,445 13,525 Human coronavirus HKU1 strain N5P8 genotype A/B recombinant, complete genome. Human coronavirus HKU1 (isolate N5) ENA graphic
53
EF065516.1 66.90 full 12,937 13,017 EF065516.1 Bat coronavirus HKU9-4, complete genome Bat coronavirus HKU9-4 ENA graphic
54
JQ765570.1 66.80 full 12,380 12,454 JQ765570.1 Human coronavirus NL63 strain NL63/DEN/2005/235, complete genome Human coronavirus NL63 ENA graphic
55
MG693168.1 66.50 full 12,804 12,884 MG693168.1 Eidolon helvum bat coronavirus CMR704-P12, partial genome Eidolon helvum bat coronavirus CMR704-P12 ENA graphic
56
JQ065045.1 65.70 full 11,425 11,502 Sparrow coronavirus HKU17 strain HKU17-6124, complete genome. Sparrow coronavirus HKU17 ENA graphic
57
AF029248.1 65.30 full 13,602 13,682 Mouse hepatitis virus strain MHV-A59 C12 mutant, complete genome. Murine hepatitis virus ENA graphic
58
LC364343.1 65.30 full 11,217 11,294 LC364343.1 Houbara coronavirus UAE-HKU28 285F genomic RNA, complete genome Houbara coronavirus UAE-HKU28 ENA graphic
59
AF201929.1 65.30 full 13,440 13,520 Murine hepatitis virus strain 2, complete genome. Murine hepatitis virus strain 2 ENA graphic
60
AF207902.1 65.30 full 13,440 13,520 Murine hepatitis virus strain ML-11 RNA-directed RNA polymerase (orf1A), RNA-directed RNA polymerase (orf1B), non-structural protein (orf2A), hemagglutinin esterase protein (orf2B), spike glycoprotein precursor (orf3), non-structural protei Murine hepatitis virus strain ML-11 ENA graphic
61
KJ473810.1 65.20 full 12,224 12,298 BtMs-AlphaCoV/GS2013, complete genome. BtMs-AlphaCoV/GS2013 ENA graphic
62
KF294380.2 64.40 full 12,539 12,604 Lucheng Rn rat coronavirus isolate Lucheng-19, complete genome. Lucheng Rn rat coronavirus ENA graphic
63
AY567487.2 63.90 full 12,440 12,514 Human Coronavirus NL63, complete genome. Human coronavirus NL63 ENA graphic
64
KJ473806.1 63.70 full 12,239 12,313 BtMr-AlphaCoV/SAX2011, complete genome. BtMr-AlphaCoV/SAX2011 ENA graphic
65
FJ376621.1 63.60 full 11,404 11,481 Thrush coronavirus HKU12-600, complete genome. Thrush coronavirus HKU12-600 ENA graphic
66
KX964649.1 63.00 full 12,332 12,397 Coronavirus AcCoV-JC34, complete genome. Coronavirus AcCoV-JC34 ENA graphic
67
JQ065047.1 62.40 full 11,312 11,389 Night-heron coronavirus HKU19 strain HKU19-6918, complete genome. Night heron coronavirus HKU19 ENA graphic
68
KP981395.1 60.60 full 11,415 11,492 KP981395.1 Porcine deltacoronavirus strain USA/IL/2014/026PDV_P11, complete genome Porcine deltacoronavirus ENA graphic
69
MZ577265.1 59.50 full 12,208 12,273 MZ577265.1 Plateatu pika coronavirus P83, complete genome plateatu pika coronavirus P83 ENA graphic
70
MT663548.1 59.10 full 12,320 12,394 MT663548.1 Bat alphacoronavirus isolate AMA_L_F, complete genome bat alphacoronavirus isolate AMA_L_F ENA graphic
71
ON872523.1 56.00 full 12,764 12,844 ON872523.1 MAG: Bat faecal coronavirus isolate CP07/aus/1, complete genome Bat faecal coronavirus ENA graphic
72
M95169.1 55.30 full 12,355 12,432 Avian infectious bronchitis virus pol protein, spike protein, small virion-associated protein, membrane protein, and nucleocapsid protein genes, complete cds. Avian infectious bronchitis virus (strain Beaudette) ENA graphic
73
KR822424.1 54.70 full 12,352 12,429 European turkey coronavirus 080385d, complete genome. European turkey coronavirus 080385d ENA graphic
74
MK359255.1 54.60 full 12,002 12,079 MK359255.1 Canada goose coronavirus strain Cambridge_Bay_2017, complete genome Canada goose coronavirus ENA graphic
75
KM454473.1 48.90 full 12,263 12,340 Duck coronavirus isolate DK/GD/27/2014, complete genome. Duck coronavirus ENA graphic