INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD29 ACC RF00070 DESC Small nucleolar RNA SNORD29 STATES 199 NODES 64 CLEN 65 W 154 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 20:37:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00070/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 3.520508 CKSUM 715332518 NULL 0.000 0.000 0.000 0.000 GA 48.00 TC 48.00 NC 47.80 EFP7GF -10.2397 0.71888 ECMLC 0.63563 -6.10451 2.82758 1600000 350666 0.003422 ECMGC 0.38963 -17.46740 -2.94520 1600000 114664 0.003488 ECMLI 0.60349 -4.75828 4.20693 1600000 268475 0.004470 ECMGI 0.41989 -12.69067 0.15078 1600000 87860 0.004553 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 154 260 -7.486 -7.693 -0.036 -6.107 IL 1 1 2 1 4 1 26 156 262 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 25 155 262 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 2 - U - - - ML 3 2 3 5 3 1 25 154 261 -8.832 -0.013 -7.150 -1.366 -0.303 -2.135 1.364 D 4 2 3 5 3 0 20 152 259 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 24 154 261 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 93 - c - - MR 6 5 3 8 3 1 24 153 260 -8.832 -0.013 -7.150 0.265 0.874 -1.662 -0.622 D 7 5 3 8 3 0 18 151 257 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 23 153 260 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 92 - u - - MR 9 8 3 11 5 1 23 152 259 -7.544 -0.028 -7.359 -7.571 -8.463 0.104 -0.996 -0.348 0.712 D 10 8 3 11 5 0 17 150 256 -5.352 -0.707 -2.978 -4.409 -2.404 IR 11 11 3 11 5 1 21 152 259 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 91 U A - - MP 12 11 3 16 6 2 23 151 258 -9.337 -9.276 -0.018 -8.053 -8.333 -8.728 -3.680 -3.329 -3.719 0.361 -3.113 -4.595 1.247 -3.579 -3.661 0.555 -4.165 0.360 3.027 -3.993 -0.782 -2.576 ML 13 11 3 16 6 1 18 149 256 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 3 16 6 1 17 149 255 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 3 16 6 0 13 145 252 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 20 150 257 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 20 150 257 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 90 G C - - MP 18 17 6 22 6 2 21 149 256 -9.337 -9.276 -0.018 -8.053 -8.333 -8.728 -4.058 -2.929 -3.994 0.627 -4.150 -4.503 0.413 -4.269 -4.073 3.202 -4.425 -0.616 1.157 -3.929 -1.611 -2.915 ML 19 17 6 22 6 1 17 147 254 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 15 147 253 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 13 144 251 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 19 148 255 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 19 148 255 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 89 C G - - MP 24 23 6 28 4 2 19 147 254 -7.486 -7.693 -0.036 -6.107 -5.677 -5.678 -5.163 -1.848 -3.681 -5.425 3.790 -4.606 -5.275 -1.724 -5.389 -3.667 -0.311 -5.667 -1.440 -4.086 ML 25 23 6 28 4 1 16 146 253 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 4 1 14 145 251 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 27 23 6 28 4 0 12 144 250 -4.568 -4.250 -2.265 -0.520 IL 28 28 5 28 4 1 18 147 253 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 29 29 6 29 3 1 17 146 253 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - u - - - ML 30 29 6 32 3 1 18 145 252 -8.470 -0.014 -7.124 -0.016 -1.035 -0.738 0.944 D 31 29 6 32 3 0 12 142 249 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 17 145 252 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - a - - - ML 33 32 3 35 3 1 17 144 251 -8.470 -0.014 -7.124 0.982 -1.896 0.447 -1.344 D 34 32 3 35 3 0 11 141 248 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 16 144 251 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 36 35 3 38 3 1 16 143 250 -8.470 -0.014 -7.124 -2.448 -2.284 -3.216 1.809 D 37 35 3 38 3 0 10 140 247 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 15 143 250 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 39 38 3 41 3 1 16 142 249 -8.470 -0.014 -7.124 -2.602 -3.952 1.876 -3.326 D 40 38 3 41 3 0 9 139 246 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 14 142 249 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - A - - - ML 42 41 3 44 3 1 15 141 248 -8.470 -0.014 -7.124 1.868 -3.386 -2.923 -3.033 D 43 41 3 44 3 0 8 138 245 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 13 141 248 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - U - - - ML 45 44 3 47 3 1 14 140 247 -8.470 -0.014 -7.124 -2.448 -2.284 -3.216 1.809 D 46 44 3 47 3 0 7 137 244 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 13 141 247 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - G - - - ML 48 47 3 50 3 1 13 139 246 -8.470 -0.014 -7.124 -2.602 -3.952 1.876 -3.326 D 49 47 3 50 3 0 7 136 243 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 12 140 246 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - A - - - ML 51 50 3 53 3 1 12 138 245 -8.470 -0.014 -7.124 1.868 -3.386 -2.923 -3.033 D 52 50 3 53 3 0 6 135 242 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 11 139 245 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - A - - - ML 54 53 3 56 3 1 12 137 244 -8.470 -0.014 -7.124 1.012 -1.241 -1.377 0.232 D 55 53 3 56 3 0 5 134 241 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 10 138 244 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - A - - - ML 57 56 3 59 3 1 11 136 243 -8.470 -0.014 -7.124 1.263 -1.443 -1.530 -0.174 D 58 56 3 59 3 0 4 133 239 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 9 136 243 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - C - - - ML 60 59 3 62 3 1 10 135 242 -2.148 -0.382 -7.124 -2.960 1.837 -3.768 -2.147 D 61 59 3 62 3 0 3 131 238 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 10 137 244 -0.499 -1.835 -6.366 0.000 0.000 0.000 0.000 [ MATL 18 ] 22 - U - - - ML 63 62 3 65 3 1 9 133 239 -8.470 -0.014 -7.124 -0.175 -1.252 -1.671 1.251 D 64 62 3 65 3 0 3 130 237 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 8 133 240 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 23 - A - - - ML 66 65 3 68 3 1 9 132 238 -8.470 -0.014 -7.124 1.868 -3.386 -2.923 -3.033 D 67 65 3 68 3 0 2 129 236 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 7 132 239 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 24 - A - - - ML 69 68 3 71 3 1 8 131 237 -8.470 -0.014 -7.124 1.091 -0.076 -1.501 -0.816 D 70 68 3 71 3 0 1 128 235 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 6 131 238 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 25 - C - - - ML 72 71 3 74 3 1 7 130 236 -8.470 -0.014 -7.124 -1.507 1.313 -2.388 -0.039 D 73 71 3 74 3 0 0 127 234 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 5 130 237 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 26 - U - - - ML 75 74 3 77 3 1 7 129 235 -8.470 -0.014 -7.124 -1.211 0.174 -2.005 1.131 D 76 74 3 77 3 0 0 126 233 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 5 129 236 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 27 - A - - - ML 78 77 3 80 3 1 6 128 234 -8.470 -0.014 -7.124 1.868 -3.386 -2.923 -3.033 D 79 77 3 80 3 0 0 125 232 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 4 128 235 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 28 - G - - - ML 81 80 3 83 3 1 5 127 233 -8.470 -0.014 -7.124 -2.602 -3.952 1.876 -3.326 D 82 80 3 83 3 0 0 124 231 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 3 127 234 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 29 - C - - - ML 84 83 3 86 3 1 5 126 232 -8.470 -0.014 -7.124 -2.960 1.837 -3.768 -2.147 D 85 83 3 86 3 0 0 123 230 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 3 126 233 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 30 - U - - - ML 87 86 3 89 3 1 4 125 231 -8.470 -0.014 -7.124 -2.448 -2.284 -3.216 1.809 D 88 86 3 89 3 0 0 122 229 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 2 125 232 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 31 - C - - - ML 90 89 3 92 3 1 4 124 230 -8.470 -0.014 -7.124 -2.960 1.837 -3.768 -2.147 D 91 89 3 92 3 0 0 121 228 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 2 124 231 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 32 - A - - - ML 93 92 3 95 3 1 3 123 229 -8.470 -0.014 -7.124 1.868 -3.386 -2.923 -3.033 D 94 92 3 95 3 0 0 120 227 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 123 230 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 33 - C - - - ML 96 95 3 98 3 1 3 122 228 -8.470 -0.014 -7.124 -1.266 1.027 -2.129 0.399 D 97 95 3 98 3 0 0 119 226 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 122 229 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 34 - U - - - ML 99 98 3 101 3 1 2 121 227 -8.470 -0.014 -7.124 -2.448 -2.284 -3.216 1.809 D 100 98 3 101 3 0 0 118 225 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 121 228 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 35 - a - - - ML 102 101 3 104 3 1 2 120 227 -8.470 -0.014 -7.124 0.817 -1.156 -1.329 0.477 D 103 101 3 104 3 0 0 117 224 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 120 227 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 36 - U - - - ML 105 104 3 107 3 1 2 119 226 -8.470 -0.014 -7.124 -2.448 -2.284 -3.216 1.809 D 106 104 3 107 3 0 0 116 223 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 119 226 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 37 - G - - - ML 108 107 3 110 3 1 1 118 225 -8.470 -0.014 -7.124 -2.602 -3.952 1.876 -3.326 D 109 107 3 110 3 0 0 115 221 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 118 225 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 38 - A - - - ML 111 110 3 113 3 1 1 117 224 -2.148 -0.382 -7.124 1.868 -3.386 -2.923 -3.033 D 112 110 3 113 3 0 0 113 220 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 119 226 -0.499 -1.835 -6.366 0.000 0.000 0.000 0.000 [ MATL 35 ] 44 - c - - - ML 114 113 3 116 3 1 1 115 221 -8.470 -0.014 -7.124 0.031 0.659 -1.460 0.051 D 115 113 3 116 3 0 0 112 219 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 115 222 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 45 - u - - - ML 117 116 3 119 3 1 1 114 220 -8.470 -0.014 -7.124 -1.158 0.517 -1.977 0.901 D 118 116 3 119 3 0 0 111 218 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 114 221 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 46 - a - - - ML 120 119 3 122 3 1 1 113 219 -8.470 -0.014 -7.124 0.569 -0.089 -0.236 -0.459 D 121 119 3 122 3 0 0 110 217 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 113 220 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 47 - a - - - ML 123 122 3 125 3 1 1 112 218 -8.470 -0.014 -7.124 0.697 -0.551 -1.208 0.338 D 124 122 3 125 3 0 0 109 216 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 112 219 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 48 - u - - - ML 126 125 3 128 3 1 1 111 217 -8.470 -0.014 -7.124 0.160 -0.550 -0.486 0.571 D 127 125 3 128 3 0 0 108 215 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 111 218 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 49 - u - - - ML 129 128 3 131 3 1 1 110 216 -8.470 -0.014 -7.124 0.008 0.344 -1.356 0.416 D 130 128 3 131 3 0 0 107 214 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 110 217 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 50 - g - - - ML 132 131 3 134 3 1 1 109 215 -8.470 -0.014 -7.124 0.478 -1.994 0.990 -1.433 D 133 131 3 134 3 0 0 106 213 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 109 216 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 51 - U - - - ML 135 134 3 137 3 1 1 108 214 -8.470 -0.014 -7.124 -2.448 -2.284 -3.216 1.809 D 136 134 3 137 3 0 0 105 212 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 108 215 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 52 - G - - - ML 138 137 3 140 3 1 1 107 213 -8.470 -0.014 -7.124 -2.602 -3.952 1.876 -3.326 D 139 137 3 140 3 0 0 104 211 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 107 214 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 53 - A - - - ML 141 140 3 143 3 1 1 106 212 -8.470 -0.014 -7.124 1.151 -1.918 0.178 -1.384 D 142 140 3 143 3 0 0 103 210 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 106 213 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 54 - A - - - ML 144 143 3 146 3 1 1 105 211 -8.470 -0.014 -7.124 1.151 -1.918 0.178 -1.384 D 145 143 3 146 3 0 0 102 208 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 105 212 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 55 - A - - - ML 147 146 3 149 3 1 1 104 210 -8.470 -0.014 -7.124 1.012 -1.241 -1.377 0.232 D 148 146 3 149 3 0 0 101 207 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 104 211 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 56 - A - - - ML 150 149 3 152 3 1 1 103 209 -8.470 -0.014 -7.124 1.012 -1.241 -1.377 0.232 D 151 149 3 152 3 0 0 99 206 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 103 210 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 57 - G - - - ML 153 152 3 155 3 1 1 102 208 -2.148 -0.382 -7.124 -0.756 -0.958 1.143 -0.549 D 154 152 3 155 3 0 0 97 204 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 105 211 -0.420 -2.045 -6.576 0.000 0.000 0.000 0.000 [ MATL 49 ] 64 - a - - - ML 156 155 3 158 3 1 1 99 206 -8.470 -0.014 -7.124 0.911 0.197 -1.474 -0.705 D 157 155 3 158 3 0 0 96 203 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 99 206 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 65 - U - - - ML 159 158 3 161 3 1 1 98 205 -8.470 -0.014 -7.124 -1.336 -0.226 -2.109 1.332 D 160 158 3 161 3 0 0 95 202 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 98 205 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 66 - a - - - ML 162 161 3 164 3 1 1 97 204 -8.470 -0.014 -7.124 0.817 -1.156 -1.329 0.477 D 163 161 3 164 3 0 0 94 201 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 97 204 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 67 - U - - - ML 165 164 3 167 3 1 1 96 203 -8.470 -0.014 -7.124 -1.199 -1.410 -1.161 1.455 D 166 164 3 167 3 0 0 93 200 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 96 203 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 68 - G - - - ML 168 167 3 170 3 1 1 95 202 -8.470 -0.014 -7.124 -2.602 -3.952 1.876 -3.326 D 169 167 3 170 3 0 0 92 198 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 95 202 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 69 - A - - - ML 171 170 3 173 3 1 1 94 201 -8.470 -0.014 -7.124 1.868 -3.386 -2.923 -3.033 D 172 170 3 173 3 0 0 90 197 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 94 201 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 70 - A - - - ML 174 173 3 176 3 1 1 93 200 -8.470 -0.014 -7.124 1.868 -3.386 -2.923 -3.033 D 175 173 3 176 3 0 0 88 195 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 93 200 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 71 - C - - - ML 177 176 3 179 3 1 1 92 199 -8.470 -0.014 -7.124 -2.960 1.837 -3.768 -2.147 D 178 176 3 179 3 0 0 85 192 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 92 199 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 72 - U - - - ML 180 179 3 182 3 1 1 91 198 -2.148 -0.382 -7.124 -0.175 -1.252 -1.671 1.251 D 181 179 3 182 3 0 0 74 181 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 99 205 -0.249 -2.717 -7.248 0.000 0.000 0.000 0.000 [ MATL 58 ] 84 - C - - - ML 183 182 3 185 3 1 1 17 36 -8.470 -0.014 -7.124 -1.856 1.532 -2.733 -0.551 D 184 182 3 185 3 0 0 17 35 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 85 - C - - - ML 186 185 3 188 3 1 1 16 34 -8.470 -0.014 -7.124 -2.960 1.837 -3.768 -2.147 D 187 185 3 188 3 0 0 16 34 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 86 - U - - - ML 189 188 3 191 3 1 1 14 33 -8.470 -0.014 -7.124 -2.448 -2.284 -3.216 1.809 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 87 - G - - - ML 192 191 3 194 3 1 1 13 31 -8.470 -0.014 -7.124 -2.602 -3.952 1.876 -3.326 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 88 - A - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 1.868 -3.386 -2.923 -3.033 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 63 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD29 ACC RF00070 DESC Small nucleolar RNA SNORD29 LENG 65 MAXL 219 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 20:37:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00070/CM NSEQ 10 EFFN 3.862305 CKSUM 715332518 STATS LOCAL MSV -7.8520 0.71888 STATS LOCAL VITERBI -9.0965 0.71888 STATS LOCAL FORWARD -3.7710 0.71888 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.21941 1.52827 1.54759 1.29126 1.38629 1.38629 1.38629 1.38629 0.30314 1.39797 4.24006 0.11279 2.23813 0.00000 * 1 2.40563 1.60164 2.94117 0.42248 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 2 2.38389 1.87240 1.73333 0.54929 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 3 2.21336 2.43876 0.45920 1.76254 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 4 3.85356 0.12517 3.69769 2.63565 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 5 1.40248 2.13701 1.90578 0.71888 6 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 6 0.69091 2.77507 1.06229 2.39831 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 7 3.19819 3.06655 3.73325 0.11803 8 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 8 3.30124 4.24809 0.07612 3.80923 9 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 9 0.08083 3.85162 3.52113 3.61776 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 10 3.19819 3.06655 3.73325 0.11803 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 11 3.30124 4.24809 0.07612 3.80923 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 12 0.08083 3.85162 3.52113 3.61776 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 13 0.66836 2.28805 2.38335 1.22504 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 14 0.49279 2.43492 2.49880 1.51735 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 15 3.57457 0.09920 4.12461 2.99093 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.30314 1.39797 4.24006 1.60465 0.22434 1.09861 0.40547 16 1.51916 2.30652 2.60087 0.49875 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 17 0.08083 3.85162 3.52113 3.61776 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 18 0.61120 1.42981 2.48244 2.00686 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 19 2.50694 0.45450 3.12562 1.42792 25 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 20 2.29129 1.25628 2.84599 0.58685 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 21 0.08083 3.85162 3.52113 3.61776 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 22 3.30124 4.24809 0.07612 3.80923 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 23 3.57457 0.09920 4.12461 2.99093 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 24 3.19819 3.06655 3.73325 0.11803 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 25 3.57457 0.09920 4.12461 2.99093 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 26 0.08083 3.85162 3.52113 3.61776 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 27 2.33046 0.65261 2.93707 1.11157 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 28 3.19819 3.06655 3.73325 0.11803 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 29 0.80654 2.22682 2.34635 1.04979 35 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 30 3.19819 3.06655 3.73325 0.11803 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 31 3.30124 4.24809 0.07612 3.80923 37 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 32 0.08083 3.85162 3.52113 3.61776 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.30314 1.39797 4.24006 1.60465 0.22434 1.09861 0.40547 33 1.37135 0.90863 2.44081 1.36230 44 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 34 2.25176 1.01106 2.82535 0.75149 45 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 35 0.98522 1.43816 1.54746 1.73448 46 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 36 0.89198 1.77760 2.25242 1.15211 47 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 37 1.27562 1.77718 1.72409 0.98540 48 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 38 1.38632 1.13213 2.36113 1.09857 49 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 39 1.04987 2.84057 0.68140 2.45672 50 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 40 3.19819 3.06655 3.73325 0.11803 51 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 41 3.30124 4.24809 0.07612 3.80923 52 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 42 0.57202 2.79108 1.25179 2.42738 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 43 0.57202 2.79108 1.25179 2.42738 54 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 44 0.66836 2.28805 2.38335 1.22504 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 45 0.66836 2.28805 2.38335 1.22504 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 46 1.95832 2.06782 0.56754 1.79865 57 G - - _ 1.38629 1.38629 1.38629 1.38629 0.30314 1.39797 4.24006 1.78176 0.18433 1.09861 0.40547 47 0.73815 1.23515 2.46144 1.92485 64 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 48 2.38421 1.54548 2.92233 0.44500 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 49 0.80654 2.22682 2.34635 1.04979 66 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 50 2.28824 2.42570 2.21438 0.35536 67 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 51 3.30124 4.24809 0.07612 3.80923 68 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 52 0.08083 3.85162 3.52113 3.61776 69 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 53 0.08083 3.85162 3.52113 3.61776 70 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 54 3.57457 0.09920 4.12461 2.99093 71 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 55 1.51916 2.30652 2.60087 0.49875 72 U - - _ 1.38629 1.38629 1.38629 1.38629 0.30314 1.39797 4.24006 2.31726 0.10374 1.09861 0.40547 56 2.76378 0.30425 3.37679 1.80111 84 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 57 3.57457 0.09920 4.12461 2.99093 85 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 58 3.19819 3.06655 3.73325 0.11803 86 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 59 3.30124 4.24809 0.07612 3.80923 87 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 60 0.08083 3.85162 3.52113 3.61776 88 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 61 2.92024 3.86559 0.10700 3.62661 89 G - - > 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 62 1.88670 0.50908 2.26511 1.94097 90 C - - > 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 63 0.60363 2.33010 1.70719 1.74572 91 A - - > 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 64 1.31702 2.10484 1.62577 0.88324 92 u - - : 1.38629 1.38629 1.38629 1.38629 0.02924 4.24006 4.24006 1.46634 0.26236 1.09861 0.40547 65 1.20214 0.75495 2.59940 1.86368 93 c - - : 1.38629 1.38629 1.38629 1.38629 0.01473 4.22555 * 1.46634 0.26236 0.00000 * //